Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m02
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42614| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_22850| Best HMM Match : CXC (HMM E-Value=0.22)                      31   1.2  
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)                      30   1.5  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      30   2.0  
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     30   2.0  
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_11735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_4922| Best HMM Match : CXC (HMM E-Value=0.013)                      28   8.2  

>SB_42614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 134 CLCKKNCATSRCLCFKNKVL*TSKCHSSLPCKNK 235
           C CKK C    C C  N ++ T  C     C+N+
Sbjct: 534 CQCKKKCVAPNCTCVSNGLVCTDVCKLQ-ECENR 566


>SB_22850| Best HMM Match : CXC (HMM E-Value=0.22)
          Length = 418

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 131 KCLCKKNCATSRCLCFKNKVL*TSKC 208
           KC C  +C T  C CFKN +  T  C
Sbjct: 367 KCNCGGHCETRLCTCFKNGLQCTPAC 392


>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 131 KCLCKKN-CATSRCLCFKNKVL*TSKCHSSL---PCKNK 235
           KC C K+ C T+RC C K+ +  T+ C  S     C+NK
Sbjct: 311 KCKCAKDRCVTNRCQCKKSGLKCTNLCGCSANGEDCQNK 349


>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
          Length = 470

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 134 CLCKKNCATSRCLCFKNKVL*TSKC--HSSLPCKN 232
           C C  +C T  C CFKN +  T  C  +  + C N
Sbjct: 414 CNCGGHCETRSCTCFKNGLQCTPACGQYKGIACLN 448


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 131 KCLCKKN-CATSRCLCFKNKVL*TSKCHSSL---PCKNK 235
           KC C K+ C T+RC C K+ +  T  C  S     C+NK
Sbjct: 395 KCKCAKDKCVTNRCQCKKSGLKCTDLCGCSANGEDCQNK 433


>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 131 KCLCKKN-CATSRCLCFKNKVL*TSKCHSSL---PCKNK 235
           KC C K+ C T+RC C K+ +  T  C  S     C+NK
Sbjct: 267 KCKCAKDKCVTNRCQCKKSGLRCTDLCGCSANGEDCQNK 305


>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 207 HLEVHNTL--FLKHRHLDVAQFFLQRHFLNPWPVPVDCKLATDRSARLVPLSPRTHQY 40
           H   H TL    +H H+  A   +Q +  N   +P+ CK+ T     ++PLS   H Y
Sbjct: 188 HATTHKTLPHIPRHTHITQALVNIQVNS-NNGTLPLLCKIDTGAEGNVIPLSNYKHIY 244


>SB_11735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 134 CLCKKNCATSRCLCFKNKVL*TSKC 208
           C C  +C T  C CFKN +  T  C
Sbjct: 283 CNCGGHCETRLCTCFKNGLQCTPAC 307


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 KCLCKKNCATSRCLCFKNKVL*TSKC 208
           +C C ++C++SRC   KN +  T  C
Sbjct: 300 RCNCMQDCSSSRCFWRKNGIECTPAC 325


>SB_4922| Best HMM Match : CXC (HMM E-Value=0.013)
          Length = 600

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 134 CLCKKNCATSRCLCFKN 184
           C C   C T RC C KN
Sbjct: 492 CHCAAGCLTKRCTCIKN 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,978,104
Number of Sequences: 59808
Number of extensions: 292196
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)