Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m02
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    27   9.6  

>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 KNFLFNINESTCLLNVKRTTVLFDEALKVNR*LILEVLISK 609
           +N L  +NE+ C +N     V+FDE    N+ L   +L+ K
Sbjct: 138 RNDLPMLNETFCAINSYAAGVVFDEVDVTNKKLNYRILLGK 178


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 KNFLFNINESTCLLNVKRTTVLFDEALKVNR*LILEVLISK 609
           +N L  +NE+ C +N     V+FDE    N+ L   +L+ K
Sbjct: 138 RNDLPMLNETFCAINSYAAGVVFDEVDVTNKKLNYRILLGK 178


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 KNFLFNINESTCLLNVKRTTVLFDEALKVNR*LILEVLISK 609
           +N L  +NE+ C +N     V+FDE    N+ L   +L+ K
Sbjct: 138 RNDLPMLNETFCAINSYAAGVVFDEVDVTNKKLNYRILLGK 178


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 KNFLFNINESTCLLNVKRTTVLFDEALKVNR*LILEVLISK 609
           +N L  +NE+ C +N     V+FDE    N+ L   +L+ K
Sbjct: 138 RNDLPMLNETFCAINSYAAGVVFDEVDVTNKKLNYRILLGK 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,084
Number of Sequences: 27780
Number of extensions: 235892
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)