Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m01
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                   66   1e-11
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   4e-11
SB_32272| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.88 
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        28   4.7  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                27   6.2  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
 Frame = +3

Query: 189 AKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYLK-----NNEGETEEPRV 353
           +K+   +N + R  + DGRV IG FL  D+  NVILG C E+ K     +   E EE RV
Sbjct: 30  SKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQEREEKRV 89

Query: 354 LGLVMVPGRHIVSIQID 404
           LGLV++ G H+VS+ +D
Sbjct: 90  LGLVLLRGEHLVSMTVD 106


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
 Frame = +3

Query: 162 PQVVEEEG---KAKLRKWLNMKFRIEMTDGRVLIGVFLCTDRDANVILGACSEYL 317
           P V+E E    + +L  WLN   R++++DGR LIG FLCTD+D N+ILG+C E++
Sbjct: 19  PSVIENEKSEQRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFV 73


>SB_32272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -2

Query: 343 SSVSPSLF-FKYSEQA-PKITFASLSVHRNTPIRTLPSVISILNFIFNHFLSFAFPSSST 170
           S+ +P+ + F Y++ + P  +F+  + + ++P+ T  +      + FN    +    S++
Sbjct: 59  STSAPTYYSFPYAQNSIPSYSFSYAAQNESSPVYTYNTAYG---YDFNSLNGYHTGYSTS 115

Query: 169 T*GASEVVLLPSLLISLACSNLFP 98
           T G S   L PS+  SL  S+ FP
Sbjct: 116 T-GISSTTLTPSVTCSLTSSSAFP 138


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 123  EMSNEGNKTTSEAPQVVEEEGKAKLRKWLNMKFRIEMTDGRV 248
            EMS EGN T S      +EE ++   +W   K  I++ DG V
Sbjct: 1115 EMSQEGNSTVSSVATGSDEE-RSSESQWQIPKIVIQLPDGEV 1155


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 27  YTWLQNNAV*KYFQTLA--RNSFIVQGKRFEQAKEMSNE 137
           Y W++   V K F  +A  R SF+V+G+R  +A+   NE
Sbjct: 388 YNWMKYGQV-KMFDIVAFIRFSFVVRGRRLRKAENNRNE 425


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 168 VVEEEGKAKLRKWLNMKFRIEM-TDGRVLIGVFLCTDRDANVILGACSE 311
           V E + K+ +   ++ K ++ + T G +L+GV     R A  +L  CSE
Sbjct: 281 VFETDIKSSVESIVSPKMKMALRTSGHLLLGVVRIYSRKAKYLLADCSE 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,166,380
Number of Sequences: 59808
Number of extensions: 241862
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)