Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l23
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    33   0.030
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    28   1.1  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    28   1.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.4  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   5.9  

>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -3

Query: 582 HTALFSAYN----LRRFYG*LVRRFAKVFSNYVTKIISLNLLCF 463
           +T LFSAYN    L    G LV  F +   N++T I  L+LLCF
Sbjct: 388 YTQLFSAYNIVYSLGMIIGPLVAGFLRDQFNFITSIACLSLLCF 431


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 522 FAKVFSNYVTKIISLNLLCFCQNFRIDE-INLFTTIFVTFNCYTQLM 385
           F KV+S  + + I   +LC      + + +  FT + +TF C+T L+
Sbjct: 60  FTKVYSESMPRTIPFTILCRKLASTLKQRVIFFTRVLLTFFCWTVLL 106


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 314 ESRRFLRRDSFCSFSLDELFEREASPSRLAWTSSLSEIMELDS 186
           E RR  RRDS    S   L+ ++   +  AW S L E   ++S
Sbjct: 671 EERRESRRDSKTFLSRTMLYNKDTGKADSAWASDLIEEQAIES 713


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 522  FAKVFSNYVTKIISLNLLCFCQNFRID 442
            F+ VFS  +T  + +NL+  C  F +D
Sbjct: 2343 FSTVFSKVLTDEVMMNLISSCYKFSVD 2369


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 576 ALFSAYNLRRFYG*LVRRFA--KVFSNYVTKIISLNLLCFCQNFRIDEINLFTTIFVTFN 403
           ALFS +N+ +         A  +   N  + + +L++    +NFR   + L   +F  ++
Sbjct: 485 ALFSIFNINKSVDQYYMEIATSEPNGNSASTVDNLSICSLPENFRRTTLYLQHPVFNRYH 544

Query: 402 CYTQLMHY 379
             T+LM Y
Sbjct: 545 SETELMRY 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,487
Number of Sequences: 5004
Number of extensions: 60883
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)