Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l23
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0880 + 25620487-25620852,25620950-25621041,25621316-256217...    31   0.87 
12_01_0193 + 1436165-1437247                                           29   3.5  
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    29   3.5  
01_06_0084 + 26286463-26288259                                         29   4.7  
12_02_0428 - 18980002-18980075,18980201-18980434,18980508-189805...    28   8.1  
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836...    28   8.1  

>06_03_0880 +
           25620487-25620852,25620950-25621041,25621316-25621789,
           25622079-25623039
          Length = 630

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 337 FEDRPLPLNPVVSYAETPFVLFRLTSCSNARRLHRVSPGHLPSRKLWSLTQHHLQ 173
           F DRP   + + ++     V +  T   N+  L  VSP  LPSR  WS  +  LQ
Sbjct: 296 FRDRPQMTDILDAFESAKDVDYENTDQGNSENLRMVSPA-LPSRTNWSFFKDKLQ 349


>12_01_0193 + 1436165-1437247
          Length = 360

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 METPRVRTARQAKKNKRSLCVRNDGIQR*RSI 331
           ME P  +  RQ  +  RS+C  NDGI R  SI
Sbjct: 289 MEPPDPQDGRQVPQEYRSMCCGNDGIIRFISI 320


>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 290 DSFCSFSLDELFEREASPSRLAWTSSLSEIMELDST 183
           D  CS + +EL  +E S  RLA    L++++ L ST
Sbjct: 397 DRLCSMTAEELASKELSEWRLAKAEELAQMVVLPST 432


>01_06_0084 + 26286463-26288259
          Length = 598

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 341 PIRRSTVTFESRRFLRRDSFCSFSLDELFEREASPSRLAWTSSLSEIME 195
           PI    +TF +R  L  DS C+F      +  A PS  AW+S +S   +
Sbjct: 56  PIAHHLLTFYARCALPGDSLCAF-----LDLPAPPSPAAWSSLISSFSQ 99


>12_02_0428 -
           18980002-18980075,18980201-18980434,18980508-18980594,
           18981843-18981907,18982132-18982220,18982291-18982636,
           18984011-18984019,18984378-18984544
          Length = 356

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 316 LNPVVSYAETPFVLFRLTSCSNARRLHRVSPGHLPSRKLWSLTQHHLQQMTRDSWRPM 143
           L  VVS + T F  +   +  N R L R++  H+  R  W L +   +   R S R M
Sbjct: 182 LATVVSSSYTLFKAWATEALVNRRILERIAVCHVSQRTAWKLLKDASKSSKRKSVRGM 239


>01_06_1133 +
           34781799-34782071,34782168-34783166,34783252-34783663,
           34783727-34784670
          Length = 875

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 214 PSRKLWSLTQHHLQQMTRDSWRPMIGLVNNTRN-DCKITLIETQN 83
           PSR+L    + +LQ++  DS   M+  V+ TRN    ++L+E  N
Sbjct: 455 PSRRLVGYKRRNLQRIRHDSELRMLICVHTTRNVPSVLSLLELSN 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,195
Number of Sequences: 37544
Number of extensions: 341073
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)