Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l23
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013990-1|AAH13990.1|  326|Homo sapiens WD repeat domain 33 pro...    31   3.0  
AK223319-1|BAD97039.1|  326|Homo sapiens WD repeat domain 33 iso...    31   3.0  
AK002156-1|BAA92113.1|  326|Homo sapiens protein ( Homo sapiens ...    31   3.0  

>BC013990-1|AAH13990.1|  326|Homo sapiens WD repeat domain 33
           protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 46  YLFDFLLIAKNIYFVFL*VLFCNHYEYYLP 135
           +LF F++   N+Y +FL +++C   EY++P
Sbjct: 293 FLFSFMI--NNVYTLFLFIIYCVRQEYFIP 320


>AK223319-1|BAD97039.1|  326|Homo sapiens WD repeat domain 33
           isoform 2 variant protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 46  YLFDFLLIAKNIYFVFL*VLFCNHYEYYLP 135
           +LF F++   N+Y +FL +++C   EY++P
Sbjct: 293 FLFSFMI--NNVYTLFLFIIYCVRQEYFIP 320


>AK002156-1|BAA92113.1|  326|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11294 fis, clone PLACE1009708. ).
          Length = 326

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 46  YLFDFLLIAKNIYFVFL*VLFCNHYEYYLP 135
           +LF F++   N+Y +FL +++C   EY++P
Sbjct: 293 FLFSFMI--NNVYTLFLFIIYCVRQEYFIP 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,502,389
Number of Sequences: 237096
Number of extensions: 2003738
Number of successful extensions: 5017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)