Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l23
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    32   0.34 
Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    30   1.8  
Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81587-8|CAE17926.1|  109|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
            protein C26G2.1 protein.
          Length = 1270

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -2

Query: 145  MIGLVNNTRNDCKITLIETQNKYFLQLIRSRINICGFATS 26
            +I LVN T  + +++ + T N YF Q IRS IN  GFA+S
Sbjct: 1017 LIHLVNTTHTNLRLSGLATANTYFFQ-IRS-INARGFASS 1054


>Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical
           protein W02D9.4 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 573 LFSAYNLRRFYG*LVRRFAKVFSNYVTKIISLNLLCFCQNFRIDEINLF 427
           +FS Y+L  F   L+     +F N ++++I L + CF  N +  EI LF
Sbjct: 246 VFSCYSLYLFTNLLLLNLKLLFINVLSQVIYLKMQCFFPNLK--EILLF 292


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 49  LFDFLLIAKNIY----FVFL*VLFCNHYEYYLPILSWDAMNHASSVGGDVESSSIISER 213
           +FD L ++ N      F  L + FC+   Y LPI ++ A+  AS +GG V S  +  ER
Sbjct: 73  IFDILAVSMNSVAAGIFGILGISFCH---YPLPIFAYGAIGEASWLGGSVCSILLAIER 128


>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = +2

Query: 77  IFILCFYE-----CYFAIITSIIYQSYHGT 151
           I +LCF+      C+F I+ +II QSY+G+
Sbjct: 274 ILLLCFWIETHSICFFTIMLNIILQSYYGS 303


>Z81587-8|CAE17926.1|  109|Caenorhabditis elegans Hypothetical
           protein T06G6.12 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 419 IVVNKLISSIRKF*QKHNRFKLIIFVT*LLKTLANRRTSYP*KRLKLYAEKRAVWIK 589
           +++  L +    F   H RF+ + FV+  ++ L   R SY   R K+Y++K A W K
Sbjct: 6   LILTTLFAIFLTFHSAHARFERVGFVSDPVQLLL--RDSYSSLRNKMYSQKLAGWKK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,899
Number of Sequences: 27780
Number of extensions: 339225
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)