Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l23
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.30 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 154 WRPMIGLVNNTRNDCKITLIETQNKYFLQLI 62
           WRP I L NN   + ++TL+     Y+  L+
Sbjct: 111 WRPDIVLYNNADGNYEVTLMTKATVYYSGLV 141


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -1

Query: 299 LRRDSFCSFSLDELFEREASPSRLAWTSSLSEIMELDSTSPP 174
           +++ S   + LDE+ ER      L +    + +  +D   PP
Sbjct: 143 VQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPP 184


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 154 WRPMIGLVNNTRNDCKITLIETQNKYFLQLI 62
           WRP I L NN   + ++TL      Y   L+
Sbjct: 111 WRPDIVLYNNADGNFEVTLATKATIYHQGLV 141


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 504 NYVTKIISLNLLCFCQNFRIDEINLFTTI 418
           N +T +I L ++C  QN R   +N+F  I
Sbjct: 4   NNLTIVIIL-IMCGVQNLRARSVNIFQDI 31


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 154 WRPMIGLVNNTRNDCKITL 98
           WRP I L NN   + ++TL
Sbjct: 107 WRPDIVLYNNADGNFEVTL 125


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 388 QLCVTIECNENCCKQIDLVNTEILTKTQQI*TNNLCNIITENF 516
           Q+C +   +++CC  +D +N  I    +     N C   TE +
Sbjct: 344 QVCRSRRHSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETY 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,879
Number of Sequences: 438
Number of extensions: 4396
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)