Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l16
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   3.9  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   6.9  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   9.1  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 170 PSFLNCSLFNMKYCFYLEEK 111
           P  L CS+ N++YC+Y E +
Sbjct: 93  PFELFCSITNIRYCYYKESE 112


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 465 TGDKFGPEIMVAPNSEAPSNP 527
           +G + G +  VAPN+E  SNP
Sbjct: 264 SGTRLGTKESVAPNNEGSSNP 284


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 381 EYVTLNQNTNHSNTKQHRVSLQIIRSALACYQLHGSSD 268
           EY+T  + +     K H    ++I   L  YQLH   D
Sbjct: 127 EYLTAYRRSELLQNKLHEYQKKLITRVLDMYQLHWQRD 164


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 366 NQNTNHSNTKQHRVSLQIIRSALACYQLHGSSDTES 259
           NQ  NH N+K+H+ +L+ +   +  +      + ES
Sbjct: 283 NQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAES 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,524
Number of Sequences: 5004
Number of extensions: 41184
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)