Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l16
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638...    29   3.1  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   4.1  
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    28   5.4  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   5.4  
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    28   7.1  
01_06_1106 + 34563368-34563679                                         28   7.1  

>09_02_0258 -
           6380702-6380758,6380767-6380794,6381352-6381467,
           6382318-6382435,6382542-6382721,6383214-6383313,
           6384315-6384618
          Length = 300

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 483 PEIMVAPNSE-APSNPRIVSSTQESPSAAEARHSADLYIRTSWIDAALA 626
           P +++  NS  APS P + ++ +  P+AA A  S  + + T+ +DA  A
Sbjct: 16  PHLLLLSNSSLAPSLPTVAAACRMPPAAAAAARSVSVSVSTA-VDAPTA 63


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 459  EDTGDKFGPEIMVAPNSEAPSNPRIVSSTQESPSAAEARHSADLYIRTSWIDAALAL 629
            +DT D F  E    P+S A S P + S   ++ + AEA+ + D   R+ W  A+  L
Sbjct: 2224 QDTQDTF--EETKVPDSAAFSMPEVDSQRTDAEAQAEAQDTRDGGSRSRWWHASKTL 2278


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 471 DKFGPEIMVAPNSEAPSNPRIVSSTQESPSAAEARHSADLYIRTS 605
           D +G +++    S  P  P  + +T E P+A EA   A++  RTS
Sbjct: 56  DAYG-DVLGMVFSPIPFQPDAIVATHEPPAATEAAEPAEIVPRTS 99


>10_08_1023 -
           22341815-22342042,22342179-22342247,22342717-22342840,
           22343193-22343317,22343815-22344276,22344357-22344700,
           22345061-22345406,22345492-22345941,22346760-22347051,
           22347171-22347515,22347611-22347834,22348072-22348563,
           22348664-22349056,22349601-22349741,22349845-22350207,
           22350494-22352683,22353298-22353360,22353434-22353535,
           22353672-22354027,22354326-22354413,22354517-22354750,
           22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 498 APNSEAPSNPRIVSSTQESPSAAEARHSADLY--IRTSW 608
           AP++ +PS+PR  S++  S +AAE       Y  ++ SW
Sbjct: 15  APDASSPSSPRASSASSSSSAAAEEPEYLARYFVVKHSW 53


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 569 LSGRGTLLCTRYYPRIRRSLGIGSH---HDLGAKLVTSILMKTA 447
           LSGR   LC R  PR R SLG         +G+     +L+KT+
Sbjct: 35  LSGRRRRLCLRSSPRPRGSLGCAGDCVVRSMGSSRERGVLVKTS 78


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 435 QTDSGRLHEDTGDKFGPEIMVAPNSEAPSNPRIVSSTQESPSAAEARHSADLYIRTSW 608
           Q  S      T D+ G     A +S+AP  P  V  +  +P  AE RH  +   R  W
Sbjct: 10  QPASAATPTSTADRLG-----AASSQAPPRPGRVPPSASAPPPAELRHGPNRCRRPPW 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,515
Number of Sequences: 37544
Number of extensions: 299625
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)