Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l16
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    31   0.69 
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    31   0.69 
AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 486  EIMVAPNSEAPSNPRIVSSTQESPSAAEARHSADLYIRTSWIDAALA 626
            ++ ++PN+    NP I+ + Q SPSA++A  + D      ++D ALA
Sbjct: 1217 DLRLSPNNN--DNPLILIAQQFSPSASQADETGDRAPERGFVDTALA 1261


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 486  EIMVAPNSEAPSNPRIVSSTQESPSAAEARHSADLYIRTSWIDAALA 626
            ++ ++PN+    NP I+ + Q SPSA++A  + D      ++D ALA
Sbjct: 1217 DLRLSPNNN--DNPLILIAQQFSPSASQADETGDRAPERGFVDTALA 1261


>AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical
           protein CD4.7 protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 385 CAVCGYVAASDMTACAARRTPAVFMRILVTSLAPRS 492
           CAVCG ++    T C A      F +IL+TS++ R+
Sbjct: 86  CAVCGIISKYCCTRCGAN-----FFQILLTSMSRRA 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,961
Number of Sequences: 27780
Number of extensions: 241603
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)