Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7l15
(401 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 28 0.62
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 1.9
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 2.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 2.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 2.5
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.3
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 3.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 4.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 4.4
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 25 5.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 7.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 24 7.7
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 0.62
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 301
N+++ +L+ + + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 319
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 2.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 104 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 271
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 343 LHDRHYVEDIVNVLFF 296
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 2.5
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 161 PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEM 18
P LI ++L L +I+FF+ P N+F M+T LT T + N E+
Sbjct: 993 PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 3.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 394 FIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 215
FI+ LL F F H V + V FFQ ++ S L + G + F +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231
Query: 214 I 212
+
Sbjct: 232 V 232
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 3.3
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +2
Query: 137 KGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
+ L+K+N+ PE+ +S + +LL L S N + + + L + ++
Sbjct: 394 ESLRKTNLSVKPEEITSRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSM 453
Query: 317 ILNVMPVMQDERKMS 361
+ N+ + D+R+ S
Sbjct: 454 LQNLCKTVNDKRRQS 468
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 209 KNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMS 361
+N K NKL + + NMD ++ +N L+ N ++ ++Q++ +S
Sbjct: 35 RNNKSSNKLSQNEEDAKNMDSVVQKLNELQ----NNVVAFQKLLQEKTPLS 81
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 4.4
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 143 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEK--KNINY 316
L+ + + ++P T+T + ++++ ES+S + + D + + LEK + +N
Sbjct: 1243 LELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNA 1302
Query: 317 ILNVMPVMQDERK 355
LN + +E K
Sbjct: 1303 SLNPLQTEINELK 1315
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 61 VFITNELPGCWALKKYIIKNTSGSFQRF 144
V + + C +YIIK T GSF +F
Sbjct: 235 VIVCSSSISCGLDMRYIIKGTRGSFLKF 262
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 194 TAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYIL 322
+ A+C+ +L ES+ +NK ++L++I+ K+ N ++
Sbjct: 92 SGAICEAIYVLQNFESTDFNKEK-ERLVSIILESNNKSNNELI 133
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 206 CKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 319
CK KL +L S + +LIA+ N L ++ +N++
Sbjct: 504 CKTAKLFKELGSDN------SELIAVTNVLPEEQVNFL 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,474
Number of Sequences: 5004
Number of extensions: 31781
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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