Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l13
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    29   0.84 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.84 
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   5.9  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
 Frame = +1

Query: 133 NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYY 312
           NL L  +S  +     +SK +    ++  ++ ++   +    +  +S L   NL+EI + 
Sbjct: 14  NLGLSVTSRRNQILFYLSKALNLAHLLRSDSLQKSFLDALKQSATDSELLHKNLDEIKFL 73

Query: 313 QCLKM--QYVLDQ--NFDNDFILTVYRMANVVTKQVRPYNSIDEK 435
           Q  K+  + +L+Q  N  ND+ L V R+ + ++  V+  NS++ +
Sbjct: 74  QNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQ 118


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 312 IIINFFQVAKPQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 178
           ++I    +  P +R     I   +SN F  + ++N  + N+ RHN
Sbjct: 135 MLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHN 179


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 217 DETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFD 354
           D  +  + QN  Y+ + E+     N+E++DYY+ L+   ++D+N D
Sbjct: 28  DSQSDPLNQNL-YNIETENVKDL-NIEDVDYYEKLQNFKIVDENID 71


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 525 RCVKFKKNTDLESYDPLITVFLQIGESINEEIQKLRK 635
           + +K KK  D+E Y  +     +  E + +E+QK+R+
Sbjct: 419 QALKIKKPIDMEEYSKVSGKVFRPVEEMEKELQKIRE 455


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 337 ERIAFLN-IDNNQFLPSCKTPKKIHFWHDSVRFVECVWPFHPKQPTFHEHV*T*LVCNNR 161
           E ++ LN +  N  + + +  K    + D+  +V+C   +     +  E     LVC+ +
Sbjct: 5   ESLSLLNSMQGNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFEATKSLKEEQ---LVCDPK 61

Query: 160 FTMTDVVQDFNELYDKIEN 104
           FT+ D +  F  +  K+++
Sbjct: 62  FTLLDSISAFEIMEPKMDS 80


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 136 DFNELYDKIENKYKLKYTFDC 74
           +FNE+++   ++Y LKY+  C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 136 DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 17
           D NE++D  E    L    D  T   +R++    Q  KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,573
Number of Sequences: 5004
Number of extensions: 63575
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)