Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l13
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.                   31   3.9  
BC036012-1|AAH36012.1|  964|Homo sapiens tripartite motif-contai...    30   6.8  
AF213365-1|AAL36460.1|  964|Homo sapiens POB1 protein.                 30   6.8  
AB020705-1|BAA74921.1|  979|Homo sapiens KIAA0898 protein protein.     30   6.8  

>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
          Length = 4563

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +1

Query: 232  RIRQNEHYHAKNESFLGFCN-LEEIDYYQCLKMQYVLDQNFDNDFILTVYRMANVVTKQV 408
            RI +N+   A +++ + F   L ++  Y     QY+ D    +D  + +   AN++ + +
Sbjct: 2150 RITENDIQIALDDAKINFNEKLSQLQTYMIQFDQYIKDSYDLHDLKIAI---ANIIDEII 2206

Query: 409  RPYNSIDEKHHYNTVRNVLILIKNARLVLSN 501
                S+DE  HY+T  N++  I +  L + N
Sbjct: 2207 EKLKSLDE--HYHTRVNLVKTIHDLHLFIEN 2235


>BC036012-1|AAH36012.1|  964|Homo sapiens tripartite
           motif-containing 37 protein.
          Length = 964

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 504 CQKAIL*RCVKFKKNTDLESYDPLITVFLQIGESINEEIQKLRKALVNFFT 656
           C+K I  +C  +       ++ PL  ++ Q    +NEE+ KLR+ L+   +
Sbjct: 109 CKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELIS 159


>AF213365-1|AAL36460.1|  964|Homo sapiens POB1 protein.
          Length = 964

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 504 CQKAIL*RCVKFKKNTDLESYDPLITVFLQIGESINEEIQKLRKALVNFFT 656
           C+K I  +C  +       ++ PL  ++ Q    +NEE+ KLR+ L+   +
Sbjct: 109 CKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELIS 159


>AB020705-1|BAA74921.1|  979|Homo sapiens KIAA0898 protein protein.
          Length = 979

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 504 CQKAIL*RCVKFKKNTDLESYDPLITVFLQIGESINEEIQKLRKALVNFFT 656
           C+K I  +C  +       ++ PL  ++ Q    +NEE+ KLR+ L+   +
Sbjct: 124 CKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELIS 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,231,779
Number of Sequences: 237096
Number of extensions: 1886648
Number of successful extensions: 3288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3288
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)