Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l04
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   4.5  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   4.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.0  
SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces po...    25   6.0  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.9  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 261 RKWVARKAQNWIWTSWKWKE*GTLTIILHYTYHLTNVFL 377
           +KW+A       W +   KE  +  ++LH  YH   + L
Sbjct: 431 QKWIADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIIL 469


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 138  LYNFDFYEIC*KGEQTRLTYKSTWRSPD*RNKLTKPI 248
            L N +F E C K    RL ++S   +PD  NKL K I
Sbjct: 1109 LQNHEFSESCYKRHFDRLIWQSLDTTPD--NKLLKNI 1143


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 270 VARKAQNWIWT--SWKWKE*GTLT 335
           +A +   W W+  +W W++ G+LT
Sbjct: 176 IAHRGYYWSWSPSTWPWRQVGSLT 199


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 301 VQIQFCAFRATHFLCDILIG 242
           + IQFCA  + + LC +L G
Sbjct: 274 IMIQFCAHLSLYNLCKVLCG 293


>SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 90

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 378 IEKHLLNDTCSVELLLKCLTLSISTKSKSNFVPSAPPIFSV 256
           + KH LN     + L+   T  +    K  ++   PP+ S+
Sbjct: 38  LPKHALNVASPTDSLMSPCTAKLQAHKKKYYMKRKPPVMSL 78


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 17  FTQFVLCMNFLMVGILSSCIVYNK 88
           F  FVLC++  +V I++  I+Y +
Sbjct: 233 FGIFVLCVSLFLVNIIADRILYGR 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,780
Number of Sequences: 5004
Number of extensions: 31304
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)