Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l04
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0117 + 17411064-17411955,17412111-17413543                       28   2.5  
01_06_1392 + 36995579-36996028,36997145-36997375                       28   2.5  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    28   3.3  
11_01_0314 + 2339241-2339728,2342720-2343608                           27   5.7  
02_05_1248 - 35237036-35237252,35237843-35239491                       27   5.7  
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335...    27   7.6  

>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 221 LKKQINKANQYVTEKMGGAEGTKLDLDFVEMERVRHFNNNST 346
           L ++I K     T  + G    KL   F+E+E + HF + ST
Sbjct: 576 LPRKIKKLQSLETLDLRGKGIDKLPASFIELENLVHFRSGST 617


>01_06_1392 + 36995579-36996028,36997145-36997375
          Length = 226

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 270 PIFSVTY*LALLICFFNPANAMLTCMLVSF-VHLFNKFRRNRSYRVCS 130
           PI    + LA++  FF P N+ +  +LVSF V++        +YR  S
Sbjct: 100 PIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTAS 147


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 270 PIFSVTY*LALLICFFNPANAMLTCMLVSF-VHLFNKFRRNRSYRVCS 130
           PI    + LA++  FF P N+ +  +LVSF V++        +YR  S
Sbjct: 357 PIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLSHILTYRSAS 404


>11_01_0314 + 2339241-2339728,2342720-2343608
          Length = 458

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 256 HRENGWRGRHKIGFGLRGNGKS 321
           HR   WRGR K   G  GNG S
Sbjct: 262 HRRRRWRGRKKPSSGGGGNGGS 283


>02_05_1248 - 35237036-35237252,35237843-35239491
          Length = 621

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 314 PFPRSPNPILCLPRHPFS 261
           P P++PNP+L  PR  FS
Sbjct: 22  PTPKTPNPLLLPPRRHFS 39


>11_06_0421 +
           23331702-23331723,23332161-23332197,23333397-23333533,
           23333675-23334241,23335068-23335777,23335915-23336102,
           23336489-23336918
          Length = 696

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 366 LLNDTCSVELLLKC----LTLSISTKSKSNFVPSAPPIFSVTY*LALLICF 226
           +L D C   +LL      LTLS+   S SN V        + + L+L ICF
Sbjct: 546 ILMDVCGRRVLLLVSIPFLTLSVGAISLSNIVKMGSLPHEILFQLSLTICF 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,503,426
Number of Sequences: 37544
Number of extensions: 171238
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)