Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l04
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY394006-1|AAQ96373.1|  377|Caenorhabditis elegans endophilin pr...    52   2e-07
AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated...    52   2e-07
AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated...    52   2e-07
Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical pr...    33   0.079
AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical...    31   0.42 
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    29   0.98 
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    29   0.98 
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    26   9.1  

>AY394006-1|AAQ96373.1|  377|Caenorhabditis elegans endophilin
           protein.
          Length = 377

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 206 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMER 319
           M+ +GL+KQ NKANQY++E MG AE TKLD  F EME+
Sbjct: 1   MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEK 38


>AF067617-2|AAC17558.3|  377|Caenorhabditis elegans Uncoordinated
           protein 57, isoform a protein.
          Length = 377

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 206 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMER 319
           M+ +GL+KQ NKANQY++E MG AE TKLD  F EME+
Sbjct: 1   MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEK 38


>AF067617-1|ABQ13063.1|  379|Caenorhabditis elegans Uncoordinated
           protein 57, isoform c protein.
          Length = 379

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 206 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMER 319
           M+ +GL+KQ NKANQY++E MG AE TKLD  F EME+
Sbjct: 1   MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEK 38


>Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical
           protein R10E11.7 protein.
          Length = 319

 Score = 33.1 bits (72), Expect = 0.079
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 357 DTCSVELLLKCLTLSISTKSKSNFVPSAPPIFSVTY*LALLICF 226
           +TCSV  L  C+TLS++ K+  N    A  I+++    ALL+ F
Sbjct: 17  ETCSVFNLFYCITLSLAIKTSKNNALPATYIYNMAISNALLVIF 60


>AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical
           protein Y87G2A.12 protein.
          Length = 791

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 197 QVNMAFAGLKKQINKANQYVTEKMGGAEGT 286
           Q+N+A   L+KQIN+ANQ V E   G   T
Sbjct: 8   QLNIARKKLQKQINQANQLVNEVNNGLNST 37


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
 Frame = +3

Query: 132 YRLYNFDFYEIC*K-------GEQTRLTYKSTWR----SP-D*RNKLTKPISMSQRKWVA 275
           + L +F FY+IC +        E + +TY S+W     +P    N L   +++    W  
Sbjct: 95  FALADFSFYKICLRLCKTKGIAENSFVTYLSSWFVFYCAPRTLSNSLETSLTLIALNWFP 154

Query: 276 RKAQNWIWTSWKWKE*GTLTIILHYTYHL 362
            + +N+   +W +   G LTII+  T  L
Sbjct: 155 FETKNFKGPTWPYIALGVLTIIIRPTVAL 183


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
 Frame = +3

Query: 132 YRLYNFDFYEIC*K-------GEQTRLTYKSTWR----SP-D*RNKLTKPISMSQRKWVA 275
           + L +F FY+IC +        E + +TY S+W     +P    N L   +++    W  
Sbjct: 95  FALADFSFYKICLRLCKTKGIAENSFVTYLSSWFVFYCAPRTLSNSLETSLTLIALNWFP 154

Query: 276 RKAQNWIWTSWKWKE*GTLTIILHYTYHL 362
            + +N+   +W +   G LTII+  T  L
Sbjct: 155 FETKNFKGPTWPYIALGVLTIIIRPTVAL 183


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 191 NIQVNMAFAGLKKQINKANQYVTEKMGGAEGT 286
           N Q+N+A   ++KQIN+A Q V E   G   T
Sbjct: 6   NAQLNIARKKIQKQINQAKQLVNEFNNGLNST 37


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 116 SFQPLSINFTCYKLCTNLIYLPL 48
           +FQ +   FTC+ +  NL+ LPL
Sbjct: 22  TFQGIERGFTCFGMFCNLVLLPL 44


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 WVARKAQNWIWTSWKWKE*GTLTIILHYTYHLTNV 371
           W    ++ W WT W   + GT++ IL ++  L ++
Sbjct: 506 WKGTGSEAWYWTQWH-TDFGTISTILAFSQPLNSL 539


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 231 KLTKPISMSQRKWVARKAQNWIWTSWKWKE 320
           KL  P++M +RK    ++ NW  TS   +E
Sbjct: 270 KLQSPVAMEERKLTNSESNNWYNTSKSCEE 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,960,291
Number of Sequences: 27780
Number of extensions: 172356
Number of successful extensions: 417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)