Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7l04
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 339 LLLKCLTLSISTKSKSNFVPSAPPIFSVT 253
           L  K L  ++   SK   VPSA  IFS +
Sbjct: 384 LARKILGYNLEAASKYQIVPSALEIFSTS 412


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 339 LLLKCLTLSISTKSKSNFVPSAPPIFSVT 253
           L  K L  ++   SK   VPSA  IFS +
Sbjct: 384 LARKILGYNLEAASKYQIVPSALEIFSTS 412


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 340 IIVKVPYSFHFHEVQIQFCAFRATHFLCDIL 248
           I+  +   + F      +C   ATH +C IL
Sbjct: 344 IVFYIISRYVFRSALEDYCNIVATHLVCGIL 374


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 330 KCLTLSISTKSKSNFVPSA 274
           K + L IST+ KSN V +A
Sbjct: 466 KDMNLEISTRPKSNTVENA 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,687
Number of Sequences: 438
Number of extensions: 2192
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)