Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k24
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    29   0.86 
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 287 LHRILIWIVNVKNNASYVCGASLTRISKLVSKQFKPDFT*MF*FTPK 147
           L+ +  +++  K+N+S  C +    +S L   +FKPD T M    P+
Sbjct: 29  LNAVYFYLIYTKSNSSLNCESLRPILSDLQESEFKPDGTTMVYVFPR 75


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 28  QRSNPLVSVSDRCSALYCDEVYFKVQHHELGIV*QILLNY 147
           QRS    S+S R S +     YFKV   +LG V Q+   Y
Sbjct: 5   QRSGSFSSISRRRSRVDSRPTYFKVTSKDLGFVDQVSEEY 44


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
 Frame = +1

Query: 22  SDQRSNPLVSVSDRCSALYCDEVYFKVQHHELGIV*Q--ILLNYF-GVN*N-------IY 171
           S  R  P  S+ D    ++C +++FK Q+ +   + +   L  YF   N N       IY
Sbjct: 158 SSPRPPPSASIEDTYPIIHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCSEHLIY 217

Query: 172 VKSGLNCLDTSFDILVNDA 228
               + C  +   +LVN A
Sbjct: 218 ALCAIGCRSSEDSLLVNQA 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,836
Number of Sequences: 5004
Number of extensions: 43594
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)