Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k24
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094...    30   2.1  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    29   3.6  
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    29   4.8  
02_05_0310 + 27769988-27770830                                         29   4.8  
12_02_0911 + 24236374-24237582                                         28   8.3  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     28   8.3  
05_01_0187 + 1349725-1352238                                           28   8.3  

>06_02_0068 +
           11107493-11107653,11109116-11109218,11109311-11109423,
           11109502-11109624,11110165-11110266,11110367-11110532,
           11111215-11111331,11111438-11111478,11111735-11111836,
           11111924-11112140,11112271-11112498,11112580-11112707,
           11112804-11112921,11113020-11113235,11113314-11113463,
           11113553-11113629,11113973-11114190,11114443-11114656,
           11114744-11114823,11114898-11115015,11115092-11115262,
           11116124-11116292,11116404-11116447,11116620-11116662,
           11116743-11116888,11118337-11118431,11118579-11119477,
           11120540-11120638,11120907-11121002,11123447-11123568,
           11123675-11123767,11123922-11124114
          Length = 1653

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +3

Query: 339 AAVAEIVTGKASVQPQPLDTEEFIR-AQMYSVEYGAALPPAYPWPDNQPRVAII*PPHTT 515
           A VA  + G  SV  +      F R   M+ V   +    +YP+P N PR         +
Sbjct: 226 AIVARCIKGSISVDWEKFIPLLFTRYLNMFEVPISSG-SGSYPFPLNVPRNTRF---LFS 281

Query: 516 THNRLVSKATLRTVCLVRVNVLDNVK 593
           +  R  SKA  +++C   + VL N+K
Sbjct: 282 SKTRTPSKAIAKSICKTHIFVLKNIK 307


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 444 ALPPAYPWPDNQPRVAII*PPHTTTHNRLVSKATLRTVCLVRVNVLDNVKVNE 602
           A+ PA P P  QP VA+  PP  TT      +           N  DN + NE
Sbjct: 88  AVTPARP-PPQQPAVAVAAPPPATTMATATEEVAAPATGNPMANAADNEEKNE 139


>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 411 RAQMYSVEYGAALPPAYPWPDNQPRVAII*PPHTTTH 521
           R  +   + GAALPP  P    QP VA +  P   TH
Sbjct: 74  RKMLKEADLGAALPPPPPAAAAQPAVAPLPGPSGATH 110


>02_05_0310 + 27769988-27770830
          Length = 280

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 388 GCGCTDALPVTISATAA 338
           GCGC DA  V++SA+AA
Sbjct: 19  GCGCKDAKSVSVSASAA 35


>12_02_0911 + 24236374-24237582
          Length = 402

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 465 WPDNQPRVAII*PPHTTTHNRLVSKAT 545
           WP   P  A + PP TTT   L SK T
Sbjct: 127 WPRPSPPPAAVAPPETTTTPALPSKVT 153


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 PTGNAAVAEIVTGKASVQPQPLDTEEFIRAQMYSV 431
           P+GN +V  +++  ASV+ Q LD  E    ++ SV
Sbjct: 362 PSGNGSVHFLISAHASVELQELDLAEAREGELLSV 396


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 PTGNAAVAEIVTGKASVQPQPLDTEEFIRAQMYSV 431
           P+GN +V  +++  ASV+ Q LD  E    ++ SV
Sbjct: 325 PSGNGSVHFLISAHASVELQELDLAEAREGELLSV 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,551
Number of Sequences: 37544
Number of extensions: 282165
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)