Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k22
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    31   0.15 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   1.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   3.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   7.4  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   7.4  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.4  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   9.8  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   9.8  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   9.8  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   9.8  

>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
 Frame = +1

Query: 49  SSYIWKFIIQN*VKMNISGLEDEVNSPVKPDDAESPSKKKLRISNSTRKSWSLMDKRTNY 228
           SS  WK   +    +++SG+E+ V  PV+     +PS + + +SNST     L    T  
Sbjct: 53  SSKFWKQFFEASANVSLSGVEEPV--PVE----SNPSDQDV-MSNSTEADLQL---HTKN 102

Query: 229 EVLQEMGVSLLEPDDNEQSCELXXXXXXXXXKGTKRKRDI--ENVNPNTNSCSPITKRSP 402
           E L++    + + D  + + +          + T +K D+  E+++ +  + +PI  R  
Sbjct: 103 EHLEKRHSFVGKSDFPDAAVQGDNTKNEDFVQSTPKKMDVSLEDISLDDAALTPIPARMQ 162

Query: 403 GPSKAKSPRVHTGK 444
            P +      HTG+
Sbjct: 163 TPLRKPENNPHTGR 176


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 124 SPVKPDDAESPSKKKLRISNSTRKSWSLMDKRTNY 228
           +P  P + +SPS + +  +N+TR S SL+ + +++
Sbjct: 80  NPDTPSNLDSPSTQNVGSTNNTRASQSLLRRSSSF 114


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 430 VHTGKPLQQTDSETTLVEGIAFDEET 507
           +HTGKPL   DS    +  IA  +ET
Sbjct: 97  LHTGKPLVNQDSNAGAIWSIAICDET 122


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 163 KKLRISNSTRKSWSLMDKRTNYE 231
           KKL ISN  +K W   D  T YE
Sbjct: 392 KKLFISNEIQKQWHKKDDFTEYE 414


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 EDEVNSPVKPDDAESPSKKK 168
           EDE  S + PDD E+ SK K
Sbjct: 813 EDETMSDIHPDDVENHSKSK 832


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 300 EQWRAPPQ--RHKTEKGHRKCESKYEFMFSDHKT 395
           E W+   Q  R   EKG  K  SKYE   +D+ T
Sbjct: 288 ESWKNSDQECRQIIEKGDFKLVSKYESTIADYST 321


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 331 KRKRDIENVNPNTNSCSP 384
           K K +++ +NPN  SC+P
Sbjct: 61  KAKEELKKLNPNFESCNP 78


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 109 EDEVN--SPVKPDDAESPSKKKLRISNSTRKSWSLMDKRTNYEVLQE 243
           E+E+   SP +   A    ++K +      +  +L +K+TNY++LQ+
Sbjct: 34  EEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQK 80


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 392 FVIGEHEFVFGFTFSMSLFRFVPL 321
           F I    F+FG+T    +F FVPL
Sbjct: 373 FAIMTGMFIFGWTVQYKVFWFVPL 396


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 361 PNTNSCSPITKRSPG-PSKAKSPRVHTGKPLQQTDSETTLVEGIAFDE-ETP 510
           P  N    I   SPG   +  S R          D+E+TL EGIA  E E+P
Sbjct: 144 PKKNFVEAIDANSPGFVYRPTSIRDRAYSISSNHDNESTLTEGIALKEIESP 195


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 412 KAKSPRVHTGKPLQQTDSETTLVEGIAFDEETPLAQCIS 528
           + +S  + +  PL+  D+  TL EG    E  P+A   S
Sbjct: 253 RRQSSFISSVNPLEADDTRETLSEGALVQESLPMAYSYS 291


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 475 LVEGIAFDEETPLAQCISAYVPR 543
           L EG+ F++ET L +     VPR
Sbjct: 67  LAEGMVFEKETTLKKVFDVLVPR 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,844
Number of Sequences: 5004
Number of extensions: 49176
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)