Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7k22
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 30 1.4
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 29 4.4
10_01_0045 + 611166-612308 28 5.8
05_04_0338 - 20392482-20392832,20393236-20393305,20393571-203937... 28 5.8
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 28 5.8
02_02_0274 + 8464207-8464534,8464646-8464908,8465024-8465506,846... 28 5.8
02_02_0273 - 8457871-8458296,8458391-8458873,8458989-8459251,845... 28 5.8
12_02_0861 - 23763927-23764034,23764140-23764196,23764624-237647... 28 7.7
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 28 7.7
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 245 WGLVCWSLMIMNNPVNWVR---AVEGTTTKAQNG 337
WG + W + + +NW+R A+EG T NG
Sbjct: 235 WGNIVWGHSVSTDLINWIRLEPAIEGNTPSDING 268
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 397 SPGPSKAKSPRVHTGKPLQQTDSE 468
SP P KAK+ R T K Q++DSE
Sbjct: 348 SPSPPKAKTTRRRTKKNTQESDSE 371
>10_01_0045 + 611166-612308
Length = 380
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 361 PNTNSCSPITKRSPGPSKAKSPRVHTGKPLQQTDSETTLVEGIAFD 498
P T + + T +P S + RV +P TD+ET +V+ +AF+
Sbjct: 37 PATTTAAIFTSTAPARSSERRSRVIDNQP---TDAETAVVQQLAFN 79
>05_04_0338 -
20392482-20392832,20393236-20393305,20393571-20393790,
20394249-20394342,20394754-20394865,20395081-20395487
Length = 417
Score = 28.3 bits (60), Expect = 5.8
Identities = 27/87 (31%), Positives = 35/87 (40%)
Frame = -1
Query: 641 SAPQRRGAAPRGCAGLRAGEDGVLTGLGCARCSLGT*ALMHCASGVSSSNAIPSTRVVSE 462
SAP PRG LR G G G S GT + A+ S S+++
Sbjct: 45 SAPASSHGCPRGARALRRAAAGDGGGNGSGGVSTGT---VDPAAASSPSSSLEELYRSCA 101
Query: 461 SVCWRGLPV*TRGLFALEGPGLRFVIG 381
+ WRG+ + L EGP L V G
Sbjct: 102 TWTWRGMRM--NYLVRGEGPPLLLVHG 126
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 97 ISGLEDEVNSPVKPDDAESPSKKKLRISNSTRKSWSLMDK 216
I L+ +V P K D ++P K + +STR L+DK
Sbjct: 134 IDNLKVKVKVPSKDDQRDAPKKSSKKERSSTRDDSHLVDK 173
>02_02_0274 +
8464207-8464534,8464646-8464908,8465024-8465506,
8465601-8466026
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 358 NPNTNSCSPITKRSPGPSKAKSPRVHTGKPLQQTDSETTLVEGIAFDEETPLAQCISAYV 537
NP+TN + R + + R+ +PL++ SE + E FDE+ L QC +V
Sbjct: 28 NPSTNPWH--SPRQGSFRECRFDRLQAFEPLRKVRSEAGVTE--YFDEKNELFQCTGTFV 83
Query: 538 PR 543
R
Sbjct: 84 IR 85
>02_02_0273 -
8457871-8458296,8458391-8458873,8458989-8459251,
8459363-8459690
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 358 NPNTNSCSPITKRSPGPSKAKSPRVHTGKPLQQTDSETTLVEGIAFDEETPLAQCISAYV 537
NP+TN + R + + R+ +PL++ SE + E FDE+ L QC +V
Sbjct: 28 NPSTNPWH--SPRQGSFRECRFDRLQAFEPLRKVRSEAGVTE--YFDEKNELFQCTGTFV 83
Query: 538 PR 543
R
Sbjct: 84 IR 85
>12_02_0861 -
23763927-23764034,23764140-23764196,23764624-23764740,
23764825-23764924,23765049-23765239,23765328-23765421,
23765918-23766023,23766223-23766337,23766487-23766554,
23766724-23767047,23767444-23767647,23767910-23768059,
23768151-23768256,23768383-23768490
Length = 615
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 650 EKESAPQRRGAAPRGCAGLRAGEDGVLTGLGCARCSLG 537
E ++A +RRG GC LR DG G C +G
Sbjct: 44 ELKAALRRRGPDSLGCERLRVRADGTTLGSDGCDCGVG 81
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 322 KGTKRKRDIENVNPNTNSCSPITKRSPGPSKAKSPRVHTG 441
+G+K D +N+NPN + P + + R+++G
Sbjct: 246 RGSKSPEDDDNINPNAAAADDAESGFVDPDRVEEQRINSG 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,004
Number of Sequences: 37544
Number of extensions: 332363
Number of successful extensions: 1170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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