Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k21
         (302 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   3.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   6.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    19   8.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   8.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 43  ENDCE*ILRLGVSGECYVVLPTGM 114
           E DC  ++R   SG   +  P+G+
Sbjct: 48  EGDCRDVVRCTKSGLKQITCPSGL 71


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 70  VAVFIRNHSRSVINNDNA 17
           + V I NH+ SVI+ D +
Sbjct: 294 IEVSIDNHTLSVISTDGS 311



 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 56  NEYCDSVCLVNV 91
           NEYC+   +VN+
Sbjct: 500 NEYCECTHVVNI 511


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 140 DPAGLRDRPIPVGKT 96
           +PA   D P  +GKT
Sbjct: 139 EPADFADAPDAIGKT 153


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 140 DPAGLRDRPIPVGKT 96
           +PA   D P  +GKT
Sbjct: 139 EPADFADAPDAIGKT 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,836
Number of Sequences: 336
Number of extensions: 855
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)