Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k21
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   0.61 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   1.8  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   5.6  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   5.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    23   7.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    23   9.9  

>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  YHCL*RFENDCE*ILRLGVSGECYVVLPTGM 114
           YHCL +     E +  LG +GEC +  P G+
Sbjct: 761 YHCLIKSGRLVEYVSYLGKAGECSLSTPNGL 791


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 2   FFFLNGIIIVYDASRMIANEYCDSVCL 82
           FF +N  I  YD    I N  C  +CL
Sbjct: 175 FFMINSKITNYDLPFSILNSPCSDLCL 201


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   FFFLNGIIIVYDASRMIANEYCDS 73
           +F   G+I+ YDAS  IA E  D+
Sbjct: 311 YFATAGVIVGYDASGHIAEETKDA 334


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 14  NGIIIVYDASRMIANEYCDSVCLVNVMSFYPPGWDDPVIPRDHN 145
           + I+ VYD S +    +C+S  ++ ++      W    I  DHN
Sbjct: 208 SSILFVYDYSSLNPTYHCESNVVLKLIDLAHSRWTKNTI--DHN 249


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 137 PAGLRDRPIPVGKTT*HSPDTPSRSI 60
           P G   RP+   KT   +P  PS+S+
Sbjct: 66  PVGNSGRPVEAFKTYPSTPAVPSKSV 91


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 89  HSPDTPSRSIHSQSFSK 39
           H P+ PS S+HS +  K
Sbjct: 416 HDPNDPSSSLHSNNAEK 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,864
Number of Sequences: 5004
Number of extensions: 13895
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)