Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k21
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    27   3.7  
03_01_0354 + 2785998-2787623                                           27   3.7  
12_01_0055 + 468381-468707,469445-469786,470023-470140,470221-47...    25   8.6  
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389...    25   8.6  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 151 AYIMIPRDYGIVPSRWVKRHNIHQ 80
           A+  +PR      +RWV+RH +H+
Sbjct: 33  AFGQMPRRRTTTTARWVRRHQVHK 56


>03_01_0354 + 2785998-2787623
          Length = 541

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 133 RDYGIVPSRWVKRHNIH 83
           RDYG+  +R+ KRH  H
Sbjct: 281 RDYGLFSARFAKRHGAH 297


>12_01_0055 +
           468381-468707,469445-469786,470023-470140,470221-470444,
           470703-470985,471659-471996
          Length = 543

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 125 RDRPIPVGKTT*HSPDTPSRS 63
           +DRPIPV  TT   P+ PS +
Sbjct: 245 KDRPIPVQLTTDLKPNLPSEA 265


>02_04_0437 -
           22938263-22938273,22938345-22938444,22938727-22938908,
           22938989-22939092,22939792-22939857,22940032-22940105,
           22940241-22940309,22940902-22941028,22941740-22942971,
           22943163-22943486,22943500-22943793
          Length = 860

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 5   FFLNGIIIVYDASRMIANEYCDSVCLVNVMSFYPPGWD-DPVIP-RDHNIC 151
           FF +   I+      I N YC   C  ++ S   PG + DP I   D ++C
Sbjct: 344 FFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMDPAIDGSDEDMC 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,460,454
Number of Sequences: 37544
Number of extensions: 83532
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)