Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7k21
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    27   3.4  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 143 YDPAGLRDRPIPVGKTT*HSP 81
           +DP+GLR  PIP GK    +P
Sbjct: 523 FDPSGLRSPPIPAGKPNNGTP 543


>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   FLNGIIIVYDASRMIANEYCDSVCLVNVM 94
           +  G I V++    +  EYC ++CLV+ M
Sbjct: 230 YRKGDISVFEVDGRLQKEYCQTLCLVSRM 258


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   FLNGIIIVYDASRMIANEYCDSVCLVNVM 94
           +  G I V++    +  EYC ++CLV+ M
Sbjct: 275 YRKGDISVFEVDGRLQKEYCQTLCLVSRM 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,929,336
Number of Sequences: 27780
Number of extensions: 78721
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)