Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7k08
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 102 2e-22
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271... 102 3e-22
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 82 5e-16
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698... 73 3e-13
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 67 1e-11
01_01_0343 + 2744123-2744311,2745238-2745291,2745517-2745587,274... 48 5e-06
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 40 0.002
01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012 39 0.004
01_01_0342 + 2740699-2740839,2742021-2742085,2742221-2742332,274... 36 0.030
01_01_0337 + 2717104-2717174,2717266-2717395 36 0.030
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 35 0.053
03_06_0661 - 35369687-35369749,35369842-35370040,35370149-353706... 29 4.6
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 28 6.0
04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183... 28 8.0
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 28 8.0
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 102 bits (245), Expect = 2e-22
Identities = 59/197 (29%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Frame = +1
Query: 139 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEIL 318
G + ++YL +YN +GW+ +L + L++G +A ++ I+ ++ Q AA+LE+L
Sbjct: 5 GSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGH-EAVYAAIERPLLFTQTAAILEVL 63
Query: 319 -------------HAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILA 459
GLV S V L Q+ R+F+ G L + + + ++
Sbjct: 64 VFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLIC 123
Query: 460 WSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKL 636
W I E+ RY++Y + PS L +LRYSTF+ +P+G+ E+ Y L + +
Sbjct: 124 WCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEK 183
Query: 637 FTISMPNAWNFAFNYYY 687
+ + MPN WNF+FNY+Y
Sbjct: 184 YCLRMPNKWNFSFNYFY 200
>01_01_0338 +
2718212-2718251,2718519-2718607,2718997-2719050,
2719201-2719271,2719375-2719456,2719561-2719657,
2719752-2719873
Length = 184
Score = 102 bits (244), Expect = 3e-22
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +1
Query: 304 VLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILAWSITEIIR 483
V +ILH VGLV S V L Q+ SR+FL G L + + + +++WSITEIIR
Sbjct: 5 VAQILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIR 64
Query: 484 YAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLFTISMPNA 660
Y+++ + PS L +LRYSTF+V+YP GI+ E+ +Y +L + + + + MPN
Sbjct: 65 YSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNK 124
Query: 661 WNFAFNYYY 687
WNF+F++ Y
Sbjct: 125 WNFSFDFSY 133
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +1
Query: 451 ILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFE 627
+++WSITEIIRY+++ + PS L +LRYSTF+V+YP GI+ E+ +Y +L +
Sbjct: 72 VISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKA 131
Query: 628 KKLFTISMPNAWNFAFNYYY 687
+ + + MPN WNF+F+++Y
Sbjct: 132 SEKYCLRMPNKWNFSFDFFY 151
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 139 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLE 312
G ++ ++YL VYN A GW+ +L+ ++ L G +A ++ ++ + Q AA LE
Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGH-EAVYAAVERPLQFAQTAAFLE 61
>08_02_0558 +
18668856-18668926,18669064-18669175,18669834-18669887,
18670121-18670191,18670291-18670372,18670463-18670559,
18670928-18670998
Length = 185
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 451 ILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFE 627
+++W ITE+ RY +Y + PS L +LRYSTF+V P+G E+ +Y L +
Sbjct: 72 LISWCITEVTRYCFYGMKESFGFTPSWLLWLRYSTFIVCLPVGTVSEVGLIYIVLPFMKA 131
Query: 628 KKLFTISMPNAWNFAFNYYY 687
+ + MPN WNF+FNY+Y
Sbjct: 132 SGKYCLRMPNKWNFSFNYFY 151
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 154 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLE 312
++YL YN +GW + W ++ L G +A ++ ++ ++ Q AA++E
Sbjct: 10 RLYLSFYNWIVFIGWVQVSWSMILALLENG-YEAVYAAVEQHLLFAQTAAIME 61
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Frame = +1
Query: 451 ILAWSI----TEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLD 615
I +W I ++IRY+++ + PS L +LRYSTF+V YP+G+ E+ +Y +
Sbjct: 180 ITSWKIYYNSLQVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFP 239
Query: 616 EIFEKKLFTISMPNAWNFAFNYYY 687
+ + + I MPN WNF+F+Y+Y
Sbjct: 240 FMKASEKYCIGMPNKWNFSFDYFY 263
>01_01_0343 +
2744123-2744311,2745238-2745291,2745517-2745587,
2745704-2745785,2746242-2746340
Length = 164
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 388 LVCGALLATQGATTSPGLPLCILAWSITEIIRYAYYALN-LVDIVPSSLTFLRYSTFLVM 564
+ CG + T TS +++W ITE+ RY++ + PS L +LRYSTF+V
Sbjct: 58 MFCGGQIHTHIFVTS-----LLISWCITEVTRYSFNGMKESFGFTPSWLLWLRYSTFIVC 112
Query: 565 YPLGITGELLCMY 603
+P+G+ E+ +Y
Sbjct: 113 FPIGMVSEVGLVY 125
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +1
Query: 544 YSTFLVMYPLGITGELLCMYHSLD--EIFEKKLFTISMPNAWNFAFNYYY 687
YSTF+V +P+G+ E++ +Y +L E+ ++ + W+F+FNY+Y
Sbjct: 137 YSTFIVCFPVGMVCEVVLIYIALPFMEMKAQQYQASEKSDKWSFSFNYFY 186
>01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012
Length = 76
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +1
Query: 121 MKSNTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNA 300
M N SG + ++YL +YN +GW + W ++ L G +A ++ ++ ++ Q A
Sbjct: 1 MAGNASG--VRRLYLSLYNWIVFIGWVQVSWFMILALLKNG-YEAVYAAVEQHLLFAQTA 57
Query: 301 AVLEILHAAVGLV 339
A++E+ + V L+
Sbjct: 58 AIMELYNHFVSLL 70
>01_01_0342 +
2740699-2740839,2742021-2742085,2742221-2742332,
2742388-2742435
Length = 121
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +1
Query: 154 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEILHAAVG 333
++YL VYN +GW + W ++ L + +A ++ ++ ++ Q AA++E+ + V
Sbjct: 55 RLYLSVYNWIVFIGWVQVSWSMILALLEK-RYEAVYAAVEQHLLFAQTAAIMELYNFFVS 113
Query: 334 LV 339
L+
Sbjct: 114 LL 115
>01_01_0337 + 2717104-2717174,2717266-2717395
Length = 66
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +1
Query: 139 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEI 315
G ++ ++YL VYN A GW+ +L+ ++ L G +A ++ ++ + Q AA LE+
Sbjct: 5 GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGH-EAVYAAVERPLQFAQTAAFLEV 62
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 541 RYSTFLVMYPLGI-TGELLCMYHSLDEIFEKKLFT 642
RY+ F+ +YP+G+ GE+ MY +L + E+KL++
Sbjct: 122 RYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 154 KIYLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWS---EIKWTVIIFQNAAVLEILHA 324
++YLL YN+ Q LGW L + L ++ + ++ ++ W A+LE +HA
Sbjct: 6 QLYLLSYNSVQALGWFVALLRLLPCLAPPSSVHSSYAVAGDLTW--------AILETIHA 57
Query: 325 AVG 333
A+G
Sbjct: 58 AIG 60
>03_06_0661 -
35369687-35369749,35369842-35370040,35370149-35370641,
35372982-35373126
Length = 299
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 440 NPGLVVAPCVASKAPH-TRNTLEYTC 366
+PG + APC PH TR +++TC
Sbjct: 208 SPGGISAPCKVEYGPHITRREIQFTC 233
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 678 VKREIPSIRH*DGEKFFLEDFIQ*VVHAEQLSSNTEGIHHEKRGIP 541
V RE+ S+ H E F E I+ + Q+++ + +H E R IP
Sbjct: 706 VMREVASVLHGLRESFDEEQIIRRSNESIQITNGQDSVHSEARPIP 751
>04_04_0599 -
26516854-26517452,26517547-26517963,26518044-26518394,
26518651-26518748,26518875-26518945,26519638-26520318
Length = 738
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 674 NAKFQAFGIEMVKSFFSKISSNEWYMQ 594
+A F F +++ FF K + N+W+ Q
Sbjct: 313 HALFNLFSVQLRLGFFDKTNENQWFTQ 339
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 259 KKHPKYHGSKNVLMTAIACKTIQEFERRYRQEDKSFQS 146
K+H +H + + A K I E+E++YRQE +S
Sbjct: 344 KRHWSHHIDEGASLEAEWNKKIVEYEKKYRQEAAELKS 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,030,699
Number of Sequences: 37544
Number of extensions: 371814
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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