Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7k08
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-14|AAB69975.2| 218|Caenorhabditis elegans Hypothetical... 159 1e-39
Z50874-9|CAA90769.1| 202|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U23170-4|AAC46701.1| 463|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z70034-9|CAA93849.1| 159|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical ... 28 5.4
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 28 7.2
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 28 7.2
>AF022985-14|AAB69975.2| 218|Caenorhabditis elegans Hypothetical
protein T15B7.2 protein.
Length = 218
Score = 159 bits (387), Expect = 1e-39
Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Frame = +1
Query: 160 YLLVYNAAQTLGWSYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEILHAAVGLV 339
YL+ YN Q LGWS +L ++++ N T + +++ + IFQ AA+LE++HA VGLV
Sbjct: 6 YLVAYNVLQILGWSAILVKTVLGLANGLTWPQLYESVEFELKIFQTAAILEVIHAIVGLV 65
Query: 340 PSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILAWSITEIIRYAYYALN-LVDI 516
S V MQV SRV LV L A S G+PL ++AWS+TE+IRY++YAL+ L
Sbjct: 66 RSPVGTTAMQVTSRVVLVWPILHLCSTARFSIGVPLLLVAWSVTEVIRYSFYALSVLKQP 125
Query: 517 VPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKKLFTISMPNAWNFAFNYYY 687
+P L +LRY+ F V+YP+G++GELL ++ SL+E+ EKK+ T+ MPN N ++++
Sbjct: 126 IPYFLLYLRYTLFYVLYPMGVSGELLTLFASLNEVDEKKILTLEMPNRLNMGISFWW 182
>Z50874-9|CAA90769.1| 202|Caenorhabditis elegans Hypothetical
protein R10E4.9 protein.
Length = 202
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/112 (28%), Positives = 54/112 (48%)
Frame = +1
Query: 259 WSEIKWTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPG 438
+ EI W ++ + L+I + L S+ V +QV R+ ++ A +
Sbjct: 38 YPEIMWFLLFITSLQYLDIPFSFF-LTKSNPVAVFVQVSGRLLVLWVASHMVSWKYAAFS 96
Query: 439 LPLCILAWSITEIIRYAYYALNLVDIVPSSLTFLRYSTFLVMYPLGITGELL 594
L + + ++E+ R YY N + SLT+LRY+ F V+YP+G T E L
Sbjct: 97 L---VAVYLLSELCRGPYYLSNCLGTPNRSLTWLRYNAFKVLYPVGFTCEAL 145
>U23170-4|AAC46701.1| 463|Caenorhabditis elegans Hypothetical
protein F58F12.3 protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 220 LVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEILHAAVGLVPSSVFVV 360
L+H L R TLD IK F+ A+L+IL +AV + + + +V
Sbjct: 270 LLHALQRDTLDDKMKIIKHAETYFRGPAILQILESAVLSLSNDIHIV 316
>Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical
protein B0240.2 protein.
Length = 774
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 671 AKFQAFGIEMVKSFFSKISSNEWYMQSSSPVIPRGYITRNVEYLKNVSDEG 519
A FQA + K F+ I + +W ++ +PVI +N+ SD+G
Sbjct: 329 AYFQAIEFAVKKIFYVHIEAAKWALKKVNPVIEEIKKAKNIRAEYQSSDDG 379
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 407 SKAPHTRNTLEYTC-----IRTTNTLDGTKPTAACKISNT 303
S APH + YTC + TT+T+ TKPT T
Sbjct: 232 STAPHIKYDTSYTCASTTTVSTTSTVTTTKPTTTTTTPTT 271
>Z70034-9|CAA93849.1| 159|Caenorhabditis elegans Hypothetical
protein C18E9.9 protein.
Length = 159
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 220 LVHFLNRGTLDAFWSEIKWTVIIFQNA-AVLEILHAAVGLVPSSVFVVLMQVYSRVFLVC 396
++ + G FW +++ F A AV+ ++ + S FV++ YS F VC
Sbjct: 25 IIFMASPGVRGWFWFICLTSILEFLAAIAVVAVVFLDLTFTRSGQFVIIELAYSGAFCVC 84
Query: 397 GAL 405
AL
Sbjct: 85 SAL 87
>AF101307-3|AAC69212.2| 315|Caenorhabditis elegans Hypothetical
protein F41H8.2 protein.
Length = 315
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -1
Query: 207 HVRPSKSLSGVIDKKINLSNRKSRGVAFH 121
+VRP K +S +I KKI+ ++ +S G+A+H
Sbjct: 288 NVRPKKKVSSIIVKKISTAHTQS-GLAWH 315
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -1
Query: 585 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 406
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 405 *SSTYQKHS*IHLHKNYKY 349
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -1
Query: 585 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 406
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 405 *SSTYQKHS*IHLHKNYKY 349
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -1
Query: 585 SSNTEGIHHEKRGIPQKRQR*GYNIDQIESVVGISYDFSYRPGEYTQRQPWTCSRSLCCQ 406
+++ EG K+ I Q GY V G SY Y + P C+ C
Sbjct: 141 NNDKEGWCRNKKYIEQTEN--GYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNC-- 196
Query: 405 *SSTYQKHS*IHLHKNYKY 349
T ++ IH HKNY++
Sbjct: 197 -QFTTREARYIHFHKNYRH 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,568
Number of Sequences: 27780
Number of extensions: 349248
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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