Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7j18
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...   211   1e-53
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...   147   3e-34
UniRef50_Q91BA2 Cluster: Calyx protein; n=2; Nucleopolyhedroviru...    51   3e-05
UniRef50_Q287M3 Cluster: CALYX/PEP; n=3; Nucleopolyhedrovirus|Re...    44   0.005
UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Re...    41   0.025
UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Re...    40   0.059
UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2; Lyman...    36   1.3  
UniRef50_Q23FU7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_A3JK22 Cluster: Putative uncharacterized protein; n=4; ...    33   6.7  

>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score =  211 bits (516), Expect = 1e-53
 Identities = 95/97 (97%), Positives = 97/97 (100%)
 Frame = +3

Query: 48  MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK 227
           MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK
Sbjct: 1   MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK 60

Query: 228 YMVDIYGASVLILRTPCSFADQLLSTFIANNYLCYFY 338
           YMVDIYGA+VL+LRTPCSFADQLLSTFIANNYLCYFY
Sbjct: 61  YMVDIYGAAVLVLRTPCSFADQLLSTFIANNYLCYFY 97



 Score =  102 bits (245), Expect = 7e-21
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +3

Query: 459 QIFDALEKIRHQNDMLMXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAALETAKDVIL 638
           QIFDALEKIRHQNDMLM             FLELSN+MTGVRNQNVQLLAALETAKDVIL
Sbjct: 151 QIFDALEKIRHQNDMLMSNVNQINLNQTNQFLELSNMMTGVRNQNVQLLAALETAKDVIL 210

Query: 639 TRLNTLL 659
           TRLNTLL
Sbjct: 211 TRLNTLL 217


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score =  147 bits (356), Expect = 3e-34
 Identities = 74/106 (69%), Positives = 81/106 (76%), Gaps = 11/106 (10%)
 Frame = +3

Query: 48  MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGG------S 209
           M P NNVMFDDASV+WID DYIYQN KMPL  FQQLLF+IPSKHRKMIND G       S
Sbjct: 1   MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFSIPSKHRKMINDIGNPACNPPS 60

Query: 210 C-----HNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLCY 332
           C     ++TVKYMVDIYGA+VL LR P  F+DQLL+TF ANNYL Y
Sbjct: 61  CSFPPSNSTVKYMVDIYGAAVLALRCPSLFSDQLLTTFTANNYLSY 106



 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 35/67 (52%), Positives = 43/67 (64%)
 Frame = +3

Query: 459 QIFDALEKIRHQNDMLMXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAALETAKDVIL 638
           QI DALEK+  Q+D+++             FLELSN +  VR QN Q+LAALET KD IL
Sbjct: 129 QILDALEKLARQSDLVVNSLNQISLNQSNQFLELSNTLNTVRAQNAQILAALETTKDAIL 188

Query: 639 TRLNTLL 659
           TRLN L+
Sbjct: 189 TRLNALV 195


>UniRef50_Q91BA2 Cluster: Calyx protein; n=2;
           Nucleopolyhedrovirus|Rep: Calyx protein - Spodoptera
           litura multicapsid nucleopolyhedrovirus (SpltMNPV)
          Length = 344

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +3

Query: 57  TNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMIND--AGGSCH-NTVK 227
           T  V+ + + ++W+  D + Q L++P     Q   ++P +HR+ + D     +C  +  K
Sbjct: 15  TITVLVEPSWIVWLSADELVQLLRLPGSCVIQ---SVPPRHRRCLGDFRCSHTCRFDNNK 71

Query: 228 YMVDIYGASVLILRTPCSFADQLLSTFIANNY 323
             VD+ G S+L  R+ C+  D LL+ F+A  Y
Sbjct: 72  VFVDLLGLSILCSRSNCNICDYLLTAFVAEVY 103


>UniRef50_Q287M3 Cluster: CALYX/PEP; n=3; Nucleopolyhedrovirus|Rep:
           CALYX/PEP - Agrotis segetum nuclear polyhedrosis virus
           (AsNPV)
          Length = 341

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 63  NVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMIND--AGGSC-HNTVKYM 233
           ++ FD   +LW+  D +   L++P      +L T+  +H+K   D      C H+  K  
Sbjct: 14  SLFFDQCCILWVSADDVLNLLRLP----HAVLQTVQPRHKKCWVDFRCSHHCSHDPNKIF 69

Query: 234 VDIYGASVLILRTPCSFADQLLSTFIANNY 323
           +D+YG   L  R     AD L++ F++  Y
Sbjct: 70  IDLYGLGNLCNRVNSPVADYLMTLFVSEAY 99


>UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Rep:
           Calyx/pep - Ecotropis obliqua NPV
          Length = 330

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
 Frame = +3

Query: 75  DDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTV------KYMV 236
           D + VLW+  + + Q L++P    Q    +IP +H+K  ND    C N+V      +  +
Sbjct: 20  DQSWVLWVCAEDVLQLLRLPPSVLQ----SIPLRHKKCWNDF--RCPNSVYRLDGSRLFI 73

Query: 237 DIYGASVLILRTPCSFADQLLSTFIANNY 323
           DIYG   L  R   + +D L + FIA  Y
Sbjct: 74  DIYGLGNLCNRVNSNQSDYLCTLFIAEIY 102


>UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Rep:
           CALYX/PEP - Clanis bilineata nucleopolyhedrosis virus
          Length = 338

 Score = 39.9 bits (89), Expect = 0.059
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +3

Query: 66  VMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCH--NTVKY--- 230
           V  + + V+W+  + + Q L++P    Q    +I  +H+K   D    C+  N  +Y   
Sbjct: 15  VFVEPSWVVWVSVEEVLQILRLPNSIVQ----SIAPRHKKCYLDFNNHCNTNNNCRYDNN 70

Query: 231 --MVDIYGASVLILRTPCSFADQLLSTFIANNY 323
              VD+Y    L  +     ADQL++ FIA+ Y
Sbjct: 71  KLFVDLYALGFLCSKVTSQAADQLMTCFIADLY 103



 Score = 32.7 bits (71), Expect = 8.9
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +3

Query: 468 DALEKIRHQNDMLMXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAALETAKDVILTRL 647
           + L+++  QND++M              LE++N +  +R QNV     L    D +  ++
Sbjct: 172 ETLDRLVRQNDLIMSAVNQLNVSNSNQHLEITNQLNAIRLQNVNTSNQLTALADALEKQI 231

Query: 648 NTLLFRNYRLVTRLD 692
            T+     RL+  +D
Sbjct: 232 ATIASEIERLLGDVD 246


>UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2;
           Lymantria dispar MNPV|Rep: Polyhedral envelope protein -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 312

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 468 DALEKIRHQNDMLMXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAAL-ETAKDVILTR 644
           + L++I  QND+++               ELSN++  ++ QNV ++  L +   D +L+ 
Sbjct: 144 ELLDRIVRQNDLILNGLNQLCLNHSNHHFELSNILNSIKLQNVNIINQLSQIFDDGVLSG 203

Query: 645 LNTLLFRNYRLVTRLDAH 698
           L+  L    RL+  LD H
Sbjct: 204 LDEKL---SRLIADLDGH 218



 Score = 34.7 bits (76), Expect = 2.2
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +3

Query: 105 DYIYQNLKMPLQAFQQLLFTIPSKHRKMIND-------AGGSCHNTVKYMVDIYGASVLI 263
           D + Q L++P      +   I ++H+K  ND        GGS  +  +  VD+YG   L 
Sbjct: 31  DEVVQLLRLPAN----IANGIHTRHKKCWNDFRGGGGGGGGSRVDGTRAFVDLYGLGYLC 86

Query: 264 LRTPCSFADQLLSTFIANNY 323
            RT  + AD L + F+A  Y
Sbjct: 87  NRTNSTLADYLCTLFVAEAY 106


>UniRef50_Q23FU7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1142

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = -3

Query: 350 SATTVK-VAQIIVCNKCAQQLVGKRARRSQNQ-NGRSVNVHHVFDRVMTRSARIVDHFSM 177
           SAT  K + +I VCN C Q    + +  +Q     +   + H++DR++ +   +   F +
Sbjct: 640 SATQNKDIGEIFVCNTCKQSCQNQNSNNNQKGFEKQYYEIKHLYDRLLIKYYNVQKKFQI 699

Query: 176 FRWDGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHISK 39
               G+ +    L   F I+  V  +   N+   +      LH  K
Sbjct: 700 LEESGKIRQTGNLNSSFQIIQQVHTLFCLNQISPQEGSFEELHEQK 745


>UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 868

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 57  TNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGG 206
           T+NV F+D+ ++++D DY+Y  +     A  QLL     +H  ++ D  G
Sbjct: 392 TSNVKFNDSEMIYLDPDYLYSKM-----AIYQLLVLDVLEHGAIVRDCQG 436


>UniRef50_A3JK22 Cluster: Putative uncharacterized protein; n=4;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Marinobacter sp. ELB17
          Length = 345

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 338 VKVAQIIVCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHF-SMFRWDG 162
           V  +Q   CN     L G+RA+ S+N+        H  DR   R  R VDH+  +  WD 
Sbjct: 168 VITSQTRFCNSRTLVLTGERAQESKNRAKYLSFEPHRTDRRAGRLGRHVDHWRPVHAWD- 226

Query: 161 EQKLLKRLQRH 129
           E+++ + ++RH
Sbjct: 227 EKQVWEIMERH 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,359,963
Number of Sequences: 1657284
Number of extensions: 11750426
Number of successful extensions: 29522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)