Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7j14
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 154 EEEPIVLLHWPFRFL 110
           EE P V +  PFRFL
Sbjct: 485 EERPDVKIFLPFRFL 499


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 350 PPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTLD*AFS 219
           P Y  +  LSP+   T       FR P  T   +  K++  +FS
Sbjct: 188 PTYQTQGLLSPSYGGTTYSFTADFRPPQETPVLASYKSVPMSFS 231


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 502  IWSCIFCEVLILSQLQYLHFL 564
            I  C FC+   +S+  Y H L
Sbjct: 1053 IMKCAFCDTPFISKGAYRHHL 1073


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,377
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)