Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7j13
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    29   3.5  
AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    29   4.6  
Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    28   6.0  
AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical ...    28   6.0  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    28   8.0  
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    28   8.0  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = -3

Query: 422 EISRSKLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPVVSPVLNQ--WERLLMESPA 249
           EI RS     N+C P+         +SICS     +  +P  S ++N+   E  L  SP 
Sbjct: 204 EIRRSSKLS-NVCTPISCHF----RSSICSWQSTNIQLLP--SKIVNEAAGESTLTSSPV 256

Query: 248 SIILTASSKVQLPIFKRRIAVTSRSMHDI 162
            + + A S +QL +F  + +VTS S  +I
Sbjct: 257 RLPIDAPSFIQLQMFNSQGSVTSLSFRNI 285


>AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical
           protein F54D10.9 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 517 PNSDAVGWWYNK-FCVITYVHRIMHRSVP 600
           P +D   WWYNK F V TY +++  R  P
Sbjct: 307 PAADIGRWWYNKPFNVQTYFNKVTCRRAP 335


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 37  LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 207
           L A  + Y+   KY E   VH V+ E Y    I+ E++++  +  +     DV A ++++
Sbjct: 420 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 479

Query: 208 -IGSCTFDEAVKMIDAGDSIKSLSHWFSTGE 297
            +  C  +  +K+ D G  +++     +TGE
Sbjct: 480 GVRKCCKNVVLKLSD-GSELRTDLVVVATGE 509


>AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical
           protein C51G7.5 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 37  LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 207
           L A  + Y+   KY E   VH V+ E Y    I+ E++++  +  +     DV A ++++
Sbjct: 152 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 211

Query: 208 -IGSCTFDEAVKMIDAGDSIKSLSHWFSTGE 297
            +  C  +  +K+ D G  +++     +TGE
Sbjct: 212 GVRKCCKNVVLKLSD-GSELRTDLVVVATGE 241


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/97 (19%), Positives = 42/97 (43%)
 Frame = +1

Query: 25   DNMSLAAKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRL 204
            D  ++   L++Y Y  +  +  +V+ +  +  R+    +    + D+ C E  +  +   
Sbjct: 781  DRHNMVHDLVLYLYRNQLQKYIEVFVQKVNAARLP---IVVGALLDVDCSEDAIKQLIIN 837

Query: 205  KIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDD 315
              G    DE V+ ++  + +K L+HW  +    G  D
Sbjct: 838  TRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATD 874


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 591 SMHYSVHISYHTKFIVPPSDSVAIRVEHVGDVQQF 487
           S HY   I+Y T  ++PPSD +A+  E +    ++
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLAHYPEY 168


>Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 453 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 277
           +NL+A  +  +     KIV  +       A  + NHR D+LQ+F   +  A R A  E  
Sbjct: 18  SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75

Query: 276 GKAFDGIARVYHLDR 232
            KA + + R +  D+
Sbjct: 76  NKAIEELKRSHKNDK 90


>Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 453 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 277
           +NL+A  +  +     KIV  +       A  + NHR D+LQ+F   +  A R A  E  
Sbjct: 18  SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75

Query: 276 GKAFDGIARVYHLDR 232
            KA + + R +  D+
Sbjct: 76  NKAIEELKRSHKNDK 90


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 378 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 241
           G N H D      ++D+LQ   D ++DAR  +  + +  A +    +YH
Sbjct: 636 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 684


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 378 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 241
           G N H D      ++D+LQ   D ++DAR  +  + +  A +    +YH
Sbjct: 721 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 769


>AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.2 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 253 GDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVS 363
           GD +K+L++W + G  TG  D  R     +   VP S
Sbjct: 209 GDPLKALTYWVNQGLVTGGRDGCRPYSFDLSCGVPCS 245


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 217 CTFDEAVKMIDAGDSIKSLSHWFSTGET 300
           CT DE VKM+   D++K +  WFS   T
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFSENIT 363


>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
           protein Y105C5B.2 protein.
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 469 HFMRNGKLLHIANVFNPNSDAVGWWYNKFC 558
           H  R+GK +H+ANV    SD  G    K C
Sbjct: 348 HMWRDGKAVHVANVKPRESDYCGGNMTKNC 377


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 217 CTFDEAVKMIDAGDSIKSLSHWFSTGET 300
           CT DE VKM+   D++K +  WFS   T
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFSENIT 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,087,153
Number of Sequences: 27780
Number of extensions: 367357
Number of successful extensions: 1137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)