Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7j10
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    37   0.002
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    35   0.010
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    35   0.010
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.27 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.84 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    28   1.1  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    28   1.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.9  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   7.8  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
 Frame = +2

Query: 347 FQWLLLLSCGAVYAVCALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLIGMCVGSYF 520
           F+  L  +C   Y     S  +  F +PA      F +S +         L+G C G   
Sbjct: 131 FKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPII 190

Query: 521 WGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 658
           W  L++  GRK                 +V +     + CRFF+GF
Sbjct: 191 WAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGF 236


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
 Frame = +2

Query: 347 FQWLLLLSCGAVYAVCALSTTTLS--FVLPATK--NDFELSSSDKGRLTATPLIGMCVGS 514
           F+  L ++C  VY+  AL +T  S  F +PA      F +S +         L G   G 
Sbjct: 130 FRKKLKITC--VYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGP 187

Query: 515 YFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 658
             W  L++  GRK                 +V +     + CRFFSGF
Sbjct: 188 IVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGF 235


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 491 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFG 661
           ++G C+G   W  +++  GRK                 +  Q     + CRFF G+G
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYG 240


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 320 ALHHAGYGCFQWLLLLSCGAVYA---VCALSTTTLSFVLPATKNDFELSSSDKGRLTATP 490
           A++  G+G +QW L    G  +    +  + T+ +   L         +      LT + 
Sbjct: 68  AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127

Query: 491 LIGMCVGSYFWGNLADARGRK 553
            +G+ VG+  W   AD  GR+
Sbjct: 128 NLGLLVGAMVWSLSADTIGRR 148


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = +2

Query: 497 GMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 658
           G   G   W  +++  GRK                 +V +     + CRFFSGF
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGF 198


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
 Frame = +2

Query: 353 WLLLLSCGAVYAVCALSTTTLS---FVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFW 523
           W+L  + G    +    T  +S    V+  +    EL++  K  +T+   +G  +G    
Sbjct: 88  WVLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIA 147

Query: 524 GNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLI 685
           G LAD  GRK                          +  RF  G+G +G   LI
Sbjct: 148 GALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWG-VGIASLI 200


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 338 YGCFQW--LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVG 511
           YG +++   +  + G +  +  + T  L + LPA +  F  ++     L+A P IG  + 
Sbjct: 103 YGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLV 162

Query: 512 SYFWGNLA 535
              WG  +
Sbjct: 163 HLLWGGFS 170


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 617 SFSGFLACRFFSGFGIIG 670
           S SGF+A RFF+G  I G
Sbjct: 255 SASGFIALRFFNGLAIAG 272


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 652 GEEPASQEPGEGLHNAGQERGQSIQK*SSNDGDLSASSVRQVT 524
           G +P+S +  E   N   ER +S      N G +S++S +  T
Sbjct: 538 GTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFT 580


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 373 AGQQQQPLEASV 338
           AGQQQQPL+AS+
Sbjct: 624 AGQQQQPLQASI 635


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 649 EEPASQEPGEGLHNAGQERGQSIQK*SSNDGDLSASSVRQVTP 521
           E P  +EPG     +G ++  S +  ++ + DL+ +S +   P
Sbjct: 61  ENPFREEPGADFDRSGSDQQYSAEAEANQEDDLNETSQQAPDP 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,709
Number of Sequences: 5004
Number of extensions: 47296
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)