Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i21
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    27   2.6  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   2.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   4.5  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   4.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   4.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.8  

>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -3

Query: 515 LAMSFRSKVLRSHFKYIGGVA-VSAIKSSF--SLMSSRNFGYSSNLSASPTSLI 363
           L  +F S   RSHF YI G+A + ++   F   LMS++N  ++  +S    SL+
Sbjct: 104 LFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLL 157


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 268 DSSTFLKGTQSSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLI 444
           DSS  +K        N +    +DT  R  N  R +G  ++F +  KL ++ ++ + L+
Sbjct: 414 DSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALV 472


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 GLADRFEEYPKLRELIKLKDDLIAETATPPMY 471
           G+ D F E+P L E   +  DLIA +   P+Y
Sbjct: 333 GVKD-FTEFPDLEETQIIYSDLIASSEVSPIY 363


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 457 TPPMYLKCDLKTFDLKDMANXFDVILVEPPLGTG 558
           TP  YLK +L  F+ +D +     I V  P+G+G
Sbjct: 65  TPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSG 98


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = +1

Query: 157 ALGSALDVP-VKKQAVSGSGGEGDKPTSKDQPDELVYTDSSTFLKGTQSSNPHNDYCQHF 333
           +L + L+ P V K   S +G     P S      +   D       T  ++P  D    F
Sbjct: 312 SLATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASPIQDQISEF 371

Query: 334 VDTGQRPQN 360
            D  Q P N
Sbjct: 372 TDQHQNPSN 380


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 563 LHPVPRGGSTRI---TSNXLAMSFRSKVLRSHFKYIGGVAVSAIKSSFSLMSSRNFGYSS 393
           LHP P G S+R+   +S     SF S    S +      +   + + +SL S+ N  Y++
Sbjct: 138 LHPRPSGNSSRLDRNSSRPFTSSFHSAPFLSSYGSSNDPSQERV-NEYSLPSNSNSTYTT 196

Query: 392 NLSA 381
            L +
Sbjct: 197 PLQS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,580
Number of Sequences: 5004
Number of extensions: 39732
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)