Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7i21
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 102 2e-22
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 101 3e-22
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 99 1e-21
12_01_0303 - 2287875-2289593 29 2.0
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 29 2.0
11_04_0064 - 13053642-13053791,13053845-13053915,13054123-130542... 29 2.6
06_03_1271 + 28883904-28884326,28885556-28886242 28 4.6
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 6.0
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 102 bits (244), Expect = 2e-22
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +1
Query: 298 SSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYLK 477
S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KD+++A++A+PPMY K
Sbjct: 445 SRGEQNDYSQNFVDTGMRPQNFIRELDLTSVAEDYPKLRELIQRKDEIVAKSASPPMYYK 504
Query: 478 CDLKTFDLKD--MANXFDVILVEPP 546
CDL+ L FDVILV+PP
Sbjct: 505 CDLRQHVLSPEFFGTKFDVILVDPP 529
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 101 bits (243), Expect = 3e-22
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Frame = +1
Query: 298 SSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYLK 477
S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KD+++A +A+PPMY K
Sbjct: 442 SRGEQNDYSQNFVDTGMRPQNFIRELDLTSVAEDYPKLRELIQRKDEIVANSASPPMYYK 501
Query: 478 CDLKTFDLKD--MANXFDVILVEPP 546
CDL+ L FDVILV+PP
Sbjct: 502 CDLRQHVLSPEFFGTKFDVILVDPP 526
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 99 bits (238), Expect = 1e-21
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 298 SSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYLK 477
S NDY Q+FVDTG RPQN+IR++ L E+YPKLRELI+ KDD+++ +A+ PMY K
Sbjct: 649 SRGEQNDYSQNFVDTGMRPQNFIRELELTSVVEDYPKLRELIQRKDDIVSNSASAPMYYK 708
Query: 478 CDLKTFDLKD--MANXFDVILVEPP 546
CDLK L FDVIL++PP
Sbjct: 709 CDLKDHMLSPEFFGTKFDVILIDPP 733
>12_01_0303 - 2287875-2289593
Length = 572
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +1
Query: 55 KMSEKLRELRERSQKRKKLLAQTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGD 225
KM K R++ +R LL+Q L V + E A G +K A SG GGEG+
Sbjct: 124 KMDRKARKM-QRLVASTALLSQELDVLAELEQAAAGGLRRSGTRRKGAASGGGGEGE 179
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 388 CQRAQHL*YSFVASDLCQQSADNNHCEDLMTACPSKM*RSRCIQVHPVGP 239
C R Y++ A + S + ++ LM ACP + ++ + + PV P
Sbjct: 219 CTRFTGRLYNYSAGEQTDPSMNKDYAAQLMEACPRDVGKTIAVNMDPVSP 268
>11_04_0064 -
13053642-13053791,13053845-13053915,13054123-13054227,
13054269-13054275,13054614-13054906,13055064-13055142,
13055322-13055551,13055646-13055792,13055988-13056067,
13056318-13056651,13057155-13057227,13057727-13057750,
13058297-13058497
Length = 597
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 148 LRHALGSALDVPV-KKQAVSGSGGEGDKPTSKDQPDELVYTD 270
LR A+ +VP K V G EGD+ DQPD + TD
Sbjct: 190 LRSAMSKGFEVPPGKAYLVDGGEMEGDELWLDDQPDNIDPTD 231
>06_03_1271 + 28883904-28884326,28885556-28886242
Length = 369
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 253 ELVYTDSSTFLKGTQSSNPHNDYCQHFVDTGQRPQNYIRDVGLADR 390
EL+ TD +K +Q + ND+CQ+F+ R Y+ G+ R
Sbjct: 114 ELMDTDLHQIIKSSQPLS--NDHCQYFLFQLLRGLKYLHSAGILHR 157
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 190 KQAVSGSGGEGDKPTSKDQPDELVYTDSSTFLKGTQSSNPHNDYCQHFVDTGQR--PQNY 363
++ VSG G T++++P + S TQ + P N +G + ++
Sbjct: 1930 RRMVSGPNGYNSASTAREEPGSRIPDRSGRIAPNTQFAGPSNRPASQEGRSGNKLYSEDD 1989
Query: 364 IRDVGLADRFEEYPKLRELIKLKDDLIAETATPPMYL 474
+R+ ++ EY +L ++ +D +++ YL
Sbjct: 1990 LREKSIS-AIREYYRLATVLGSLEDALSDAPRAAEYL 2025
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,165
Number of Sequences: 37544
Number of extensions: 256258
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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