Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7i21
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical pr... 28 4.1
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 27 7.2
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 27 7.2
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 27 9.5
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical ... 27 9.5
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 130 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 243
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 993 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1030
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 130 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 243
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 1066 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1103
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 130 VSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKD 243
V+ S R A GS + VP + S GGE D P+S D
Sbjct: 1066 VADPSRTRGAAGSTVFVPAAEDIESRGGGEIDIPSSGD 1103
>Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical
protein H03G16.1 protein.
Length = 239
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +1
Query: 253 ELVYTDSSTFLKGTQSSNPHNDYCQHFVDTGQRPQNYIRDVGLADRFEEYPKLRELIKLK 432
ELV+TD S FLK TQ N + F + ++D ++F+ + L K+K
Sbjct: 25 ELVFTDMSIFLKMTQLDLNRNKW---FEFNNKDYDGDLKD--FCNQFDRFVDSENLWKMK 79
Query: 433 ----DDLIAETATPPMYLKCD---LKTFDLK 504
++ TA P + KCD LK+ LK
Sbjct: 80 FVSLNNWNVGTALPRILKKCDTESLKSIKLK 110
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 302 QILTMIIVSTLLTQVRGHKTISEMLGSLTGLRNIRNYV 415
Q T ++ T L V G KT+SEML + +I V
Sbjct: 220 QFSTRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKV 257
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 302 QILTMIIVSTLLTQVRGHKTISEMLGSLTGLRNIRNYV 415
Q T ++ T L V G KT+SEML + +I V
Sbjct: 220 QFSTRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKV 257
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 346 QRPQNYIRDVGLADRFEEYPKLRELIK 426
QRPQ I+D+G+ +E +LR+L K
Sbjct: 26 QRPQFDIKDIGMFHLIDEIERLRKLWK 52
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 61 SEKLRELRERSQKRKKLLAQTLGVSSVSE 147
S+K+ E+ ER +++KKLLA+ +S + E
Sbjct: 369 SKKIVEVHERYEQKKKLLAKLHDISCLRE 397
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 276 RGVGVYKFIRLVLTGGFISFTSASRHSLFFNRYV 175
+ + ++F++L T +I RHS F NRYV
Sbjct: 550 KSIKFFEFLKLFFTSAYIHM----RHSTFLNRYV 579
>AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical
protein Y51H7C.10 protein.
Length = 237
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 112 LAQTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGDK 228
L Q + SS+SELRH L A+ ++ + G+ +G+K
Sbjct: 29 LLQEIVDSSMSELRHRLQEAVFATSFRRKILGNSEKGEK 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,883
Number of Sequences: 27780
Number of extensions: 227217
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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