Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i20
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...   175   5e-45
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...   110   1e-25
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    99   2e-22
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...   100   3e-22
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    91   9e-20
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    75   8e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    75   1e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    56   3e-09

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  175 bits (425), Expect = 5e-45
 Identities = 99/190 (52%), Positives = 121/190 (63%)
 Frame = +3

Query: 36  VSLXPIRIXXNXAQXXKAEVARMXXFIXAIAIXDLVXXTLGPXGMDKILXSCGRNSGQVE 215
           +SL P +I        + E AR+  F+ AIA+ DLV  TLGP GMDKIL S   +SG + 
Sbjct: 1   MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58

Query: 216 XTNDGATILXSIGVDNPAAKXLXDMSXVXXEEXGDGTTSVTVXXXXXXXXXXKLIEQKLH 395
            TNDGATIL SI +DN AAK L ++S V  +E GDGTTSV V           ++  K+H
Sbjct: 59  VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118

Query: 396 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFT 575
           PQ II G+RIA+  A  AL  +S D+    + A  R DLENIARTTLSSKILS +K HF 
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFA 176

Query: 576 KLAVDAVLRL 605
           +LAVDAVLRL
Sbjct: 177 QLAVDAVLRL 186


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score =  110 bits (265), Expect = 1e-25
 Identities = 63/170 (37%), Positives = 98/170 (57%)
 Frame = +3

Query: 90  EVARMXXFIXAIAIXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDNPA 269
           E  R    +   AI ++V  +LGP G+DK+L     + G V  TNDGATIL  + V++PA
Sbjct: 20  EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPA 76

Query: 270 AKXLXDMSXVXXEEXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQA 449
            K L +++    +E GDGTTSV +          +L++ K+HP TII G+R+A   A + 
Sbjct: 77  GKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKF 136

Query: 450 LAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 599
           + +       +L + S    L N+A+T++SSKI+ N  + F+ +AVDA+L
Sbjct: 137 MTDVLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAML 182


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score =   99 bits (238), Expect = 2e-22
 Identities = 58/161 (36%), Positives = 86/161 (53%)
 Frame = +3

Query: 123 IAIXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDNPAAKXLXDMSXVX 302
           +A+ D +  TLGP G DK++     + G+V  +NDGATI+  + + +PAAK L D++   
Sbjct: 34  VAVQDTIRTTLGPLGADKLMVD---DRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQ 90

Query: 303 XEEXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKN 482
             E GDGTTSV V            +E  +    II G+R A+  A   + E +  H   
Sbjct: 91  DAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAI-HLDL 149

Query: 483 LNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL 605
            +E  LR  L   A T ++SK++ ++   FTK+ VDAVL L
Sbjct: 150 SDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL 190


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 60/174 (34%), Positives = 94/174 (54%)
 Frame = +3

Query: 84  KAEVARMXXFIXAIAIXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDN 263
           K +  R+   + A ++ D +  +LGP GMDK++ +     G+V  TNDGATIL  + V +
Sbjct: 16  KPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQT---GKGEVILTNDGATILKHLSVLH 72

Query: 264 PAAKXLXDMSXVXXEEXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAK 443
           PAAK L D+S     E GDGTTSV +          KL+++ +HP  I   ++ A+    
Sbjct: 73  PAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTV 132

Query: 444 QALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL 605
             + E +   + +  E+ LR      A T+L+SKI+S +      +AVDAVL++
Sbjct: 133 DCMKENALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKV 181


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 91.5 bits (217), Expect = 9e-20
 Identities = 59/157 (37%), Positives = 85/157 (54%)
 Frame = +3

Query: 129 IXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDNPAAKXLXDMSXVXXE 308
           + ++V  +LGP G+DKIL S     G++  TNDGATIL  + V++  AK L  +S    +
Sbjct: 46  VANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDD 102

Query: 309 EXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 488
           E GDGTT V V           LI++ +HP  I  G+  A   A + L +A  D      
Sbjct: 103 EIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAISDVVDFSP 161

Query: 489 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 599
           E +   +L   A+T+L SK++S   +HF  +AVDAVL
Sbjct: 162 ENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVL 196


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 51/183 (27%), Positives = 87/183 (47%)
 Frame = +3

Query: 48  PIRIXXNXAQXXKAEVARMXXFIXAIAIXDLVXXTLGPXGMDKILXSCGRNSGQVEXTND 227
           P+ +            A+M     A A+ D++   LGP  M K+L       G V  TND
Sbjct: 4   PVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTND 60

Query: 228 GATILXSIGVDNPAAKXLXDMSXVXXEEXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 407
           G  IL  I V +PAAK + +++    EE GDGTTSV +           L+++K+HP  +
Sbjct: 61  GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120

Query: 408 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 587
           I  ++ A + A   + E +     N+++     ++  + RT + +K+++   +    LA+
Sbjct: 121 IRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLAL 175

Query: 588 DAV 596
            AV
Sbjct: 176 RAV 178


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 49/162 (30%), Positives = 75/162 (46%)
 Frame = +3

Query: 120 AIAIXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDNPAAKXLXDMSXV 299
           AI + D++   LGP G  K+L      +G ++ T DG  +L  + + NP A  +   +  
Sbjct: 25  AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81

Query: 300 XXEEXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 479
             +  GDGTTSV +            I + LHP  I  G+ +A + A   L     D + 
Sbjct: 82  QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141

Query: 480 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL 605
           +      R  L N+A+T+LS+KI S   E      VDA+L +
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTI 177


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 43/157 (27%), Positives = 67/157 (42%)
 Frame = +3

Query: 129 IXDLVXXTLGPXGMDKILXSCGRNSGQVEXTNDGATILXSIGVDNPAAKXLXDMSXVXXE 308
           + ++   +LGP G +KI+ +   +  Q   TND ATI+  + V +PAAK + D +     
Sbjct: 38  LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94

Query: 309 EXGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 488
           E GD    V V           +I   L P  I  G+ +A     + L E   D    + 
Sbjct: 95  ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151

Query: 489 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 599
                 +L    RT +SSK   N ++  + L   A+L
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAIL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,054
Number of Sequences: 5004
Number of extensions: 23989
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)