Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i08
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    33   0.035
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    29   0.99 
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.3  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.2  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +2

Query: 341 ELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSL 463
           EL +K++   A+DL  FA HA R  I  +DV LL++R + +
Sbjct: 416 ELFFKQI---ANDLSAFADHAHRKTIDTQDVVLLMKRQRKI 453


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 368 YASDLEVFARHAR-RCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDA 544
           YAS  + + R  + + + Q +D++ L+ +++   S++   +  A L+ + S+ E  F D 
Sbjct: 336 YASLYKEYTRKEQEKLRKQNDDLQNLLSKHRI--SRIPMSTVNAFLRAEDSIPES-FSDE 392

Query: 545 SSNFDEPAMKDKMRKEE 595
            + ++E   KD++  EE
Sbjct: 393 QAYYEEKRRKDQLEAEE 409


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 452 NKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEE-PPM 604
           NK      ES SP +AL+   S A    ++ SS  DE   K++  K++ PPM
Sbjct: 180 NKIKSEASESASP-SALQALDSTAAGSSKEHSSPHDETVKKEENDKDQYPPM 230


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 203  YFEMSAFEDLSASQRLRAALKRD 271
            YFE  AFEDL  ++R    +KRD
Sbjct: 1119 YFEFDAFEDLVNTKRPVIYMKRD 1141


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +2

Query: 293 STVGLEITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQ 472
           STV   +TK   + +LE  YK  ++   DL          K+  E   + + + KS    
Sbjct: 147 STVTEAMTKMKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKS---- 202

Query: 473 LESRSPTAALKRKSS 517
           L+S S +++  RKSS
Sbjct: 203 LDSISHSSSSSRKSS 217


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +2

Query: 455 KSLRSQLESRSP-----TAALKRKSSL--AEDIFEDASSNFDEPAMKDKMRKEEPPME 607
           +SL+S++ES SP     + A K K  L  A     D  SN+D     D++ +E  P++
Sbjct: 17  ESLQSEIESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVK 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,672
Number of Sequences: 5004
Number of extensions: 51959
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)