Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7i08
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0787 + 19635858-19635990,19636112-19636183,19637358-196373... 44 1e-04
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 34 0.11
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 32 0.44
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 31 0.78
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 29 3.1
10_08_0188 - 15596062-15597084,15597513-15597791 29 4.1
02_03_0360 + 18104948-18106159 29 4.1
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 7.2
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 28 9.6
03_06_0360 - 33375303-33375578,33375583-33375791,33375923-33375992 28 9.6
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 28 9.6
01_05_0528 - 22976627-22976833,22976944-22976992,22977052-229770... 28 9.6
>04_03_0787 +
19635858-19635990,19636112-19636183,19637358-19637390,
19637765-19637845,19637956-19638083
Length = 148
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Frame = +2
Query: 248 LRAALKRDVTAICLES--TVGLEITKPAMDLILELIYKK------LSVY-----ASDLEV 388
LR L+ V +I G+E++ P + I +L YK L+ Y A D+E+
Sbjct: 29 LRDRLRLAVISIATSEGKKAGMEVSDPVVACIADLAYKTVGSSKLLATYITEQLAKDVEL 88
Query: 389 FARHARRCKIQGEDVKLLVRRNKSL-------RSQLESRSPTAALKRKSSLAED 529
FA+HA R I+ EDV L RN+ L +L+ + P++ KRK S +D
Sbjct: 89 FAQHAGRKSIKMEDVILTAHRNEHLMGLLRTFSQELKGKEPSSERKRKKSSKKD 142
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 377 DLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNF 556
+LE + A K Q ++ L RN+ L Q+E + ++ SLAED + +
Sbjct: 129 ELEEYRAEAAHLKNQQATIRRLEERNRQLEQQMEEKVREMVEMKQRSLAEDSQKTLEALK 188
Query: 557 D-EPAMKDKMRK 589
D E A++D++R+
Sbjct: 189 DRERALQDQLRQ 200
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 368 YASDLEVFARHARRCKIQGEDVKLLVRRNKSLRS-QLESRSPTAALKRKSSLAEDIFEDA 544
YAS L+ A R + KL + N L S ++++ S+ ++ D
Sbjct: 191 YASVLDAAAYEKERSIMNSVMSKLFEKENDHLDSMEIQNHGVDFDAAEPSNARNELQMDK 250
Query: 545 SSNFDEPAMKDKMRKEEPPMEDAIDMTVENVV 640
E + D+M + E P E+ +D V N+V
Sbjct: 251 REETSEEDLDDQMEETEDPSEEELDDLVLNIV 282
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 474 LNRGPQQRLSSASHRSPKIYSKTHPPTLTSPQ*KTKCAR 590
L RGP+ L+ + +RS +S++HP T P CAR
Sbjct: 63 LARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACAR 101
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 212 MSAFEDLSASQRLRAALKRDVTAICLESTVGLEITKPAMDLILELIYKKLSVYASDLEVF 391
+ A LSAS RA L R V E+TVG ++ P++ + E +Y + A+ L+ F
Sbjct: 295 LKAANILSASATSRAELVRRVAWQLEEATVG-DLLIPSLSCVSETLY-DVDAVAAILDEF 352
Query: 392 A-RHA 403
A RHA
Sbjct: 353 ALRHA 357
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 452 NKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAI 616
NK + + A K+K + A + E+ DEP K K++KEE AI
Sbjct: 138 NKKFAKKTAKKPSPATAKKKEAAAAAVKEE-----DEPTKKPKLKKEEDDSNSAI 187
>02_03_0360 + 18104948-18106159
Length = 403
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 377 DLEVFARHARRCKIQGEDVKLLVRRNKSLRS---QLESRSPTAALKRKSSLAEDIFEDAS 547
++E R A R + + E + ++R LR Q++ + K+++ E + ++
Sbjct: 173 EVEEMRREAERAQEELEKEREMLRLADELREERVQMKLLEARLQFEEKNAVVEQLRDELE 232
Query: 548 SNFDEPAMKDKMRKEEPPMEDAID 619
+ + KD+ ++EEPP DA D
Sbjct: 233 AFLG--SKKDRQQQEEPPPPDADD 254
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Frame = +2
Query: 356 KLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLESRSP---TAALKR-----K 511
+L V D+E AR + CK +G K+L+ + +L+ E +SP ++ KR +
Sbjct: 249 RLEVDVDDMENLARACKVCKCEGLQ-KILI-KEATLQRYAEHKSPRDLDSSQKRFILHGQ 306
Query: 512 SSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAIDMTVENVVDLTAD 655
S ED A + E + + R++E +++ +M+ ++ VD AD
Sbjct: 307 SLPEEDRLPSALRHIFEECLANS-REQECYNDESNEMSRDSGVDAAAD 353
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 209 EMSAFEDLSASQRLRAAL--KRDVTAICLESTVGLEITKPAMDLILELIY 352
E+ F+ LS Q + A +DV E V L +T A+D+IL L Y
Sbjct: 762 EIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSY 811
>03_06_0360 - 33375303-33375578,33375583-33375791,33375923-33375992
Length = 184
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 265 AGRNSHLFGINCRIGNHQTSNGLNT 339
AG + FG N +GN Q GLNT
Sbjct: 36 AGNTENRFGFNATLGNVQAFPGLNT 60
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -2
Query: 580 FVFHCGLV-KVGGCVFEYIFG 521
FVF C L+ VGGC+F Y G
Sbjct: 23 FVFFCCLIASVGGCIFGYDIG 43
>01_05_0528 -
22976627-22976833,22976944-22976992,22977052-22977077,
22977201-22977276,22977432-22977529,22977986-22978066,
22978244-22978315,22978468-22978498,22978513-22979246
Length = 457
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 58 NFEVAAYSQCIEG-RSNLLKF---DSIISFADLKNYVGI-YRVC 174
N +V + IEG R+ L KF D I +F DLKN VG RVC
Sbjct: 244 NLQVMQLDEPIEGLRAFLPKFELMDRINTFTDLKNKVGCSIRVC 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,205
Number of Sequences: 37544
Number of extensions: 307109
Number of successful extensions: 740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -