Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i08
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    38   0.006
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    32   0.53 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   3.7  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    28   6.5  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/70 (34%), Positives = 40/70 (57%)
 Frame = +2

Query: 446 RRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAIDMT 625
           R+  +LRSQ E +    A   ++ LA+   ED   N +E    ++M+K+ P +ED +   
Sbjct: 710 RKLSNLRSQ-ELQKERQAKDLRAELAQTANEDQVENLNESI--EEMQKKIPLIEDEVKDI 766

Query: 626 VENVVDLTAD 655
           ++NV D+TAD
Sbjct: 767 LKNVADITAD 776


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/70 (34%), Positives = 40/70 (57%)
 Frame = +2

Query: 446 RRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAIDMT 625
           R+  +LRSQ E +    A   ++ LA+   ED   N +E    ++M+K+ P +ED +   
Sbjct: 710 RKLSNLRSQ-ELQKERQAKDLRAELAQTANEDQVENLNESI--EEMQKKIPLIEDEVKDI 766

Query: 626 VENVVDLTAD 655
           ++NV D+TAD
Sbjct: 767 LKNVADITAD 776


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = +2

Query: 209 EMSAFEDLSASQRLRAALKRDVTAICLEST-VGLEITKPAMDLILELIYKKLSVYASDLE 385
           E+++  ++ A+Q L +  + DV    +E+  + +E       L +EL   K+    S +E
Sbjct: 586 ELTSSLEMVAAQLLSSQQETDVAVTKVENLELKMEEAHRMYLLDIELSRVKIDELQSSIE 645

Query: 386 VFA---RHARRCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDIFEDASSNF 556
           V +   R  +   +Q E++KL +R  + L++ L      A  K K+   E   ED+S  F
Sbjct: 646 VLSKLEREVQSSNLQNEELKLSLRNFEELQADL------AMSKAKNEELEQQIEDSSREF 699


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 425 EDVKLLVRRNKSLRSQLESRS-PTAALKRKSSLAEDIFEDASSNFDE-PAMKDKMRKEEP 598
           +++KL+V  N+ LRSQL+ +      +K   +  +D   DA S   E P   D     + 
Sbjct: 235 KEIKLIVNENRQLRSQLKQKDIEIIGIKSCVNFLQDPQRDAKSIKKELPVQVDPSTPRDN 294

Query: 599 PMEDAIDMT 625
            + D  D++
Sbjct: 295 ELMDCSDLS 303


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 503 KRKSSLAEDIFEDASSNFDEPAMKDKMRKEEPPMEDAIDMTVENVVDLTAD*IDSNEFH 679
           +RK     D+ E  +S+ +E A+KD ++K  P  ED  D   E   D   D  D  +++
Sbjct: 11  RRKRDQFRDMEEGEASDDEEIAVKDDLKKRTPRGEDEADEDDEADEDEDEDGEDLGKYN 69


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 305 IRQLIPNRWLLRPALTLHVAFAKQINLQKQTFRNKNN 195
           IR ++P R  LR    LH+   +QI +++Q  R  NN
Sbjct: 302 IRMMLPKR--LRIRFGLHIGIDEQIAMERQDDRTNNN 336


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 308 EITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLES 481
           ++ +  + +  E +  K  V +SDL ++   +    +   D+KL V  N + R  LES
Sbjct: 334 QVVETILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLKLQVSGNGTFRKLLES 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,640
Number of Sequences: 27780
Number of extensions: 295375
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)