Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i08
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 125 ILSNFNKLLRPSIHWL*AATSKLML 51
           +LSN+NKL+RP ++   A T K+ L
Sbjct: 32  LLSNYNKLVRPVVNVTDALTVKIKL 56


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 125 ILSNFNKLLRPSIH 84
           +LSN+NKL+RP ++
Sbjct: 36  LLSNYNKLVRPVVN 49


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 125 ILSNFNKLLRPSIH 84
           +LSN+NKL+RP ++
Sbjct: 36  LLSNYNKLVRPVVN 49


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 521 AEDIFEDASSN---FDEPAMKDKMRKE-EPPMEDA 613
           AEDIFED  S+    D   +  +  K   PP++DA
Sbjct: 51  AEDIFEDGKSDKEILDNLLLSTRYDKRLLPPVQDA 85


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -1

Query: 125 ILSNFNKLLRP 93
           +LSN+N+L+RP
Sbjct: 28  LLSNYNRLIRP 38


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -1

Query: 125 ILSNFNKLLRP 93
           +LSN+N+L+RP
Sbjct: 28  LLSNYNRLIRP 38


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -1

Query: 125 ILSNFNKLLRP 93
           +LSN+N+L+RP
Sbjct: 41  LLSNYNRLIRP 51


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 723 QCETSAQTTIISNVEW 676
           QC+ S Q  I+  +EW
Sbjct: 62  QCDLSNQNDILKVIEW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,419
Number of Sequences: 438
Number of extensions: 3698
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)