Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7i03
(735 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternati... 31 3.2
M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein. 31 3.2
BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor, argini... 31 3.2
BC000488-1|AAH00488.1| 669|Homo sapiens RBM14 protein protein. 31 3.2
AK222830-1|BAD96550.1| 669|Homo sapiens RNA binding motif prote... 31 3.2
AF315632-1|AAK77961.1| 669|Homo sapiens coactivator activator p... 31 3.2
AF080561-1|AAC64058.1| 669|Homo sapiens SYT interacting protein... 31 3.2
AB209007-1|BAD92244.1| 552|Homo sapiens RNA binding motif prote... 31 3.2
AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein. 31 3.2
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro... 31 4.3
BC117135-1|AAI17136.1| 1233|Homo sapiens SEC24 related gene fami... 31 4.3
BC040137-1|AAH40137.1| 1268|Homo sapiens SEC24 related gene fami... 31 4.3
BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein. 31 4.3
AJ131245-1|CAA10335.1| 1268|Homo sapiens Sec24B protein protein. 31 4.3
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein. 31 4.3
AB076348-1|BAD01535.1| 255|Homo sapiens keratin associated prot... 30 7.5
BC026170-1|AAH26170.1| 289|Homo sapiens transmembrane protein 1... 30 9.9
AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 9.9
AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 9.9
AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 9.9
AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associat... 30 9.9
AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo ... 30 9.9
AC110620-1|AAY24144.1| 107|Homo sapiens unknown protein. 30 9.9
>M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternative
splicing factor mRNA, complete cds. ).
Length = 248
Score = 31.5 bits (68), Expect = 3.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 463 RRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHH 576
R S RSRS +R RS+ R RR+R SP +P H
Sbjct: 204 RSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH 241
>M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 463 RRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHH 576
R S RSRS +R RS+ R RR+R SP +P H
Sbjct: 204 RSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH 241
>BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 463 RRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHH 576
R S RSRS +R RS+ R RR+R SP +P H
Sbjct: 204 RSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH 241
>BC000488-1|AAH00488.1| 669|Homo sapiens RBM14 protein protein.
Length = 669
Score = 31.5 bits (68), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -1
Query: 420 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSR 250
S S GAAY S G T+ + +P+ Y GQ P Q +S
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301
Query: 249 IGPGGGSVLRQPSFSA 202
+GP GG+ QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314
>AK222830-1|BAD96550.1| 669|Homo sapiens RNA binding motif protein
14 variant protein.
Length = 669
Score = 31.5 bits (68), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -1
Query: 420 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSR 250
S S GAAY S G T+ + +P+ Y GQ P Q +S
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301
Query: 249 IGPGGGSVLRQPSFSA 202
+GP GG+ QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314
>AF315632-1|AAK77961.1| 669|Homo sapiens coactivator activator
protein.
Length = 669
Score = 31.5 bits (68), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -1
Query: 420 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSR 250
S S GAAY S G T+ + +P+ Y GQ P Q +S
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301
Query: 249 IGPGGGSVLRQPSFSA 202
+GP GG+ QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314
>AF080561-1|AAC64058.1| 669|Homo sapiens SYT interacting protein
SIP protein.
Length = 669
Score = 31.5 bits (68), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -1
Query: 420 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSR 250
S S GAAY S G T+ + +P+ Y GQ P Q +S
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301
Query: 249 IGPGGGSVLRQPSFSA 202
+GP GG+ QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314
>AB209007-1|BAD92244.1| 552|Homo sapiens RNA binding motif protein
14 variant protein.
Length = 552
Score = 31.5 bits (68), Expect = 3.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -1
Query: 420 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILSSR 250
S S GAAY S G T+ + +P+ Y GQ P Q +S
Sbjct: 176 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 235
Query: 249 IGPGGGSVLRQPSFSA 202
+GP GG+ QPS SA
Sbjct: 236 LGPYGGA---QPSASA 248
>AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein.
Length = 248
Score = 31.5 bits (68), Expect = 3.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 463 RRISEGRSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHH 576
R S RSRS +R RS+ R RR+R SP +P H
Sbjct: 204 RSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH 241
>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like protein
rA9 protein.
Length = 1649
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 481 RSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHHGS*TKQHF 600
R ++ ++ R H G W RRT RS S +P GS + +H+
Sbjct: 1067 RKKAKDKSREHRRGPWGHSRRTSRSRSGSP--GSSSYEHY 1104
>BC117135-1|AAI17136.1| 1233|Homo sapiens SEC24 related gene family,
member B (S. cerevisiae) protein.
Length = 1233
Score = 31.1 bits (67), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 523 VLQCGSVFYLWTGSGLQRFF*HIVL 449
++ CGSVFY+W G G F VL
Sbjct: 1125 LMDCGSVFYIWVGKGCDNNFIEDVL 1149
>BC040137-1|AAH40137.1| 1268|Homo sapiens SEC24 related gene family,
member B (S. cerevisiae) protein.
Length = 1268
Score = 31.1 bits (67), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 523 VLQCGSVFYLWTGSGLQRFF*HIVL 449
++ CGSVFY+W G G F VL
Sbjct: 1160 LMDCGSVFYIWVGKGCDNNFIEDVL 1184
>BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.
Length = 1080
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 481 RSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHHGS*TKQHF 600
R ++ ++ R H G W RRT RS S +P GS + +H+
Sbjct: 498 RKKAKDKSREHRRGPWGHSRRTSRSRSGSP--GSSSYEHY 535
>AJ131245-1|CAA10335.1| 1268|Homo sapiens Sec24B protein protein.
Length = 1268
Score = 31.1 bits (67), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 523 VLQCGSVFYLWTGSGLQRFF*HIVL 449
++ CGSVFY+W G G F VL
Sbjct: 1160 LMDCGSVFYIWVGKGCDNNFIEDVL 1184
>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
Length = 1654
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 481 RSRSTNRKRSHIAGRWSVGRRTRRSPSPNPHHGS*TKQHF 600
R ++ ++ R H G W RRT RS S +P GS + +H+
Sbjct: 1072 RKKAKDKSREHRRGPWGHSRRTSRSRSGSP--GSSSYEHY 1109
>AB076348-1|BAD01535.1| 255|Homo sapiens keratin associated protein
protein.
Length = 255
Score = 30.3 bits (65), Expect = 7.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 731 SRCQPVRCP*LMRTTVTFLRSPFFLSCCSNSVCPC*GCNSVF*RKCC 591
S C P C L+ T V+ + SP + C S C GC S CC
Sbjct: 35 SCCAPAPCLTLVCTPVSCVSSPCCQAACEPSACQS-GCTSSCTPSCC 80
>BC026170-1|AAH26170.1| 289|Homo sapiens transmembrane protein 163
protein.
Length = 289
Score = 29.9 bits (64), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 570 GIRRR*ASGPATHTPPSCNVAPFSICGPAP 481
GI+RR + GP PP + P + GPAP
Sbjct: 6 GIQRRSSQGPTVPPPPRGHAPPAAAPGPAP 35
>AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 393 FTNFFSGLITEDSNS-STGIAICKPATKPEVSYSGQTTLPGGQYILSSRIGPGGGSV 226
F F+ +T SNS TG+ C PA P+VS S T G + + P G +
Sbjct: 1104 FQILFNNYVTNKSNSFPTGVIGCIPAHDPDVSDSLNYTFVQGNELRLLLLDPATGEL 1160
>AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 393 FTNFFSGLITEDSNS-STGIAICKPATKPEVSYSGQTTLPGGQYILSSRIGPGGGSV 226
F F+ +T SNS TG+ C PA P+VS S T G + + P G +
Sbjct: 1104 FQILFNNYVTNKSNSFPTGVIGCIPAHDPDVSDSLNYTFVQGNELRLLLLDPATGEL 1160
>AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 393 FTNFFSGLITEDSNS-STGIAICKPATKPEVSYSGQTTLPGGQYILSSRIGPGGGSV 226
F F+ +T SNS TG+ C PA P+VS S T G + + P G +
Sbjct: 1104 FQILFNNYVTNKSNSFPTGVIGCIPAHDPDVSDSLNYTFVQGNELRLLLLDPATGEL 1160
>AF536542-1|AAN77183.1| 916|Homo sapiens SR-related CTD associated
factor 6 protein.
Length = 916
Score = 29.9 bits (64), Expect = 9.9
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 442 SHSILCVRRISEGRSRST-NRKRSHIAGR---WSVGRRTR-RSPSPNP 570
S S C R S RSRS+ +R RS R +S GRR R RS SP P
Sbjct: 773 SRSSSCSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTP 820
>AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo 2
protein.
Length = 3014
Score = 29.9 bits (64), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 393 FTNFFSGLITEDSNS-STGIAICKPATKPEVSYSGQTTLPGGQYILSSRIGPGGGSV 226
F F+ +T SNS TG+ C PA P+VS S T G + + P G +
Sbjct: 1104 FQILFNNYVTNKSNSFPTGVIGCIPAHDPDVSDSLNYTFVQGNELRLLLLDPATGEL 1160
>AC110620-1|AAY24144.1| 107|Homo sapiens unknown protein.
Length = 107
Score = 29.9 bits (64), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 570 GIRRR*ASGPATHTPPSCNVAPFSICGPAP 481
GI+RR + GP PP + P + GPAP
Sbjct: 6 GIQRRSSQGPTVPPPPRGHAPPAAAPGPAP 35
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,315,288
Number of Sequences: 237096
Number of extensions: 3042613
Number of successful extensions: 7691
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7664
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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