Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i03
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    32   0.48 
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    32   0.48 
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    28   7.9  

>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +2

Query: 482 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMG 634
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTG 64


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +2

Query: 482 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIPNMG 634
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTG 64


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 191 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 84
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 191 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 84
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 481 RSRSTNRKRSHIAGRWSVGRRTRRSPSP-NPHHGS*TKQHFLQ 606
           RSRS +  RS    R S  R   RSPSP    H S   Q+ LQ
Sbjct: 116 RSRSRSSSRSRSPVRESRRRSESRSPSPKRDFHSSMRNQYHLQ 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,259
Number of Sequences: 27780
Number of extensions: 459824
Number of successful extensions: 1377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)