Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i02
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088...    27   1.6  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    27   1.6  
04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941     27   2.7  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    27   2.7  
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028           25   8.3  
03_04_0097 - 17272138-17273082                                         25   8.3  

>08_02_1022 +
           23707993-23708528,23708620-23708706,23708807-23708863,
           23708955-23709261,23709545-23709631,23709720-23709767
          Length = 373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 1   PIAAGK----LPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNT-SC 138
           P+ +GK    LP     +H WK  + +  ++G    ++++TLI+ + T SC
Sbjct: 303 PVLSGKSKASLPQVSHCIHGWKFGEPWGIWSGLIGGTAVQTLILAYLTISC 353


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -3

Query: 209 QEVFDETXSRYHQFPGVVSSIIFTQLVLNTIISVLSEDG 93
           + ++D   +    FP  + +++  QL + T ++V+ +DG
Sbjct: 197 ERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDDG 235


>04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941
          Length = 243

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   PIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIV 123
           P      PNT+  L  W LK V   F+G   PS L +L+++
Sbjct: 105 PNTQSAFPNTRLSLLGWILKLVQERFSGD--PSLLSSLLVL 143


>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
            6349369-6349475,6349608-6349733,6349809-6349890,
            6350057-6350130,6351184-6352631,6353391-6353540,
            6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 16   KLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVKI 147
            K P+    +HTWKLK  FS     K  S LK L  V ++S + +
Sbjct: 1084 KQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126


>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
          Length = 341

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 39  IAHVEI-KTSVFEFQRQQTAVFAQNANYCV*HELRENNRTNDARKLVVPAXRFVEHF 206
           I H+ + K SV  FQ  Q   F Q+      H+  + +RTND +       +FV+ F
Sbjct: 70  IEHIPLPKPSVNNFQ--QNGSFVQSTT----HKAEDTHRTNDTKLASSVGGQFVDDF 120


>03_04_0097 - 17272138-17273082
          Length = 314

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 9   RWQIAKHKAFIAHVEIKTSV 68
           +W I +H+AF+  V  +TS+
Sbjct: 219 KWSIHRHRAFVEEVTAETSL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,290,826
Number of Sequences: 37544
Number of extensions: 74347
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)