Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i02
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    28   1.0  
AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protea...    27   2.4  
L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protea...    27   2.4  
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   7.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   7.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   7.3  
AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U28943-9|AAA68361.2|  325|Caenorhabditis elegans Serpentine rece...    25   9.7  

>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 79  NGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRL 186
           NGS    S K  I V +  C+ ++   TPGN W +L
Sbjct: 69  NGSFSFDSSKKQIHVKSVKCIYMLPKATPGNKWAQL 104


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 88  KLPSSLKTL-IIVFNTSCVKIIELTTPGNWWYRLXVSSNTS 207
           K P++L  L I ++NTSCV+I  +T      +RL  +SN++
Sbjct: 37  KSPATLDGLKIFLYNTSCVQIALITFAFLSQHRLLTNSNSA 77


>AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1B.1 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  FSSFNGSKLPSSLKTLIIVFNTSC 138
           F++FNG+ + S LKT +I  N  C
Sbjct: 214 FTNFNGNNVVSELKTTMIQVNCYC 237


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  VCCR*NSKTLVLISTCAINALCLAIC 14
           +C   N+KT++ IS   INA C  +C
Sbjct: 187 ICIASNAKTILSISADDINACCGMVC 212


>U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine
          protease protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 91 VCCR*NSKTLVLISTCAINALCLAIC 14
          +C   N+KT++ IS   INA C  +C
Sbjct: 15 ICIASNAKTILSISADDINACCGMVC 40


>L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine
          protease protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 91 VCCR*NSKTLVLISTCAINALCLAIC 14
          +C   N+KT++ IS   INA C  +C
Sbjct: 15 ICIASNAKTILSISADDINACCGMVC 40


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 153 FDYFHATRVKHNN*RFERRRQFAAVETRKH 64
           F++ +  R+K+ N   E+  QF A++  KH
Sbjct: 207 FEHLNHIRIKNTNFNQEQLEQFVAMDQWKH 236


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 197  DETXSRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLP 81
            D + +  +  PG+ S I+ T +    I +V+  DG+ LP
Sbjct: 2991 DASGNYVYPDPGLDSQILTTDVYGKPIYTVIGPDGTALP 3029


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 197  DETXSRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLP 81
            D + +  +  PG+ S I+ T +    I +V+  DG+ LP
Sbjct: 3036 DASGNYVYPDPGLDSQILTTDVYGKPIYTVIGPDGTALP 3074


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 197  DETXSRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLP 81
            D + +  +  PG+ S I+ T +    I +V+  DG+ LP
Sbjct: 3036 DASGNYVYPDPGLDSQILTTDVYGKPIYTVIGPDGTALP 3074


>AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical
           protein H35B03.2b protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 76  FNGSKLPSSLKTLIIVFNTSCVKIIELTTP 165
           FNG  L  SLK+  I+F++    +++L +P
Sbjct: 29  FNGRVLIRSLKSKNIIFSSGAETMLDLRSP 58


>AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical
           protein H35B03.2a protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 76  FNGSKLPSSLKTLIIVFNTSCVKIIELTTP 165
           FNG  L  SLK+  I+F++    +++L +P
Sbjct: 243 FNGRVLIRSLKSKNIIFSSGAETMLDLRSP 272


>AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical
           protein T07H3.3a protein.
          Length = 362

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -3

Query: 137 QLVLNTIISVLSEDGSLLPLKLENTCFN 54
           +L  + I++++SE+G+   +KL++ CF+
Sbjct: 192 KLRADLILALVSENGNRFAVKLKDACFD 219


>AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical
           protein T07H3.3b protein.
          Length = 422

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -3

Query: 137 QLVLNTIISVLSEDGSLLPLKLENTCFN 54
           +L  + I++++SE+G+   +KL++ CF+
Sbjct: 192 KLRADLILALVSENGNRFAVKLKDACFD 219


>AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical
           protein F36H9.8 protein.
          Length = 140

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 59  FNFHVCNKRFVFGNLPAAI 3
           FNF +CNK+    NL AA+
Sbjct: 76  FNFSICNKKKELENLLAAL 94


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 54  IKTSVFEFQRQQTAVFAQNANYCV*HELRENNRTNDARKLVV 179
           ++ +  +F+RQ+T+V        + H    NN+  DA K  V
Sbjct: 81  VQQAAAQFERQKTSVEMAREQVQILHNSLNNNQELDAEKQYV 122


>U28943-9|AAA68361.2|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 59 protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88  KLPSSLKTL-IIVFNTSCVKIIELTTPGNWWYRLXVSS 198
           K P++L  L I ++NTSCV+I  +T      +RL  +S
Sbjct: 37  KSPATLDGLKIFLYNTSCVQIALITFAFLSQHRLLTNS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,710,674
Number of Sequences: 27780
Number of extensions: 71902
Number of successful extensions: 238
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)