Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i02
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   2.9  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    19   8.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    19   8.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    19   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 183 PVPPISWRR 157
           P PP+ WRR
Sbjct: 338 PPPPLVWRR 346


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 102 AQNANYCV*HELRENNRTNDARKL 173
           + N NY   +    NN  N+ +KL
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKL 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,058
Number of Sequences: 438
Number of extensions: 700
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)