Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i01
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.040
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 534 NRGDY--SPPLAPRPTYCPVAF*GGTYEGCSPAMATPRLRDSSAAPPPVSVN 385
           N G Y  SPP AP+    P++  G T    SPA A P    SS +P  V+ N
Sbjct: 3   NGGIYEESPPPAPQSAATPISSSGMT----SPAAAPPPATTSSGSPASVASN 50


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 627 HHQEGLLPPGGAPAHLFPDDTAPSGSSAVHANRGDYSPPLAPRPTYCPVA 478
           HHQ+ L       A      ++PSGSS  H++    + P A    Y   A
Sbjct: 19  HHQQ-LFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAA 67


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 627 HHQEGLLPPGGAPAHLFPDDTAPSGSSAVHANRGDYSPPLAPRPTYCPVA 478
           HHQ+ L       A      ++PSGSS  H++    + P A    Y   A
Sbjct: 19  HHQQ-LFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAA 67


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 283 HPPVSNGVRESGLKLWPKSRRPTP 354
           H P    +   G+K+ P+ + P+P
Sbjct: 377 HQPFLLNIPSEGIKVEPRDKAPSP 400


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,688
Number of Sequences: 336
Number of extensions: 5196
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)