Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i01
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.13 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.18 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.71 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    27   3.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   6.6  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 606  PPGGAPAHLFPDDTAPSGSSAVHANRGDYSP-PLAPRPTYCPVA 478
            PP  AP    P    P+G++A+  N G  +P PL  + T  P++
Sbjct: 1895 PPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLS 1938


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
 Frame = -2

Query: 606  PPGGAPAHLFPDDTAPSGSSAVHANRG-------DYSPPLAPRPTYC--PVAF*GGTYEG 454
            PP  AP+   P   APSG+  V A  G         + P  P+P+    PV    G    
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123

Query: 453  CSPAMATPRLRDSSAAPP 400
              P++A P +   S APP
Sbjct: 1124 PKPSVAAPPVPVPSGAPP 1141


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = -2

Query: 609  LPPGGAPAHLFPDDTAPSGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGCSPAMATP 430
            +PP   P+H  P       S    A+R   SP + P   Y P+A    T    +PA    
Sbjct: 945  VPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASST---VNPAHTYK 1001

Query: 429  RLRDSSAAPPP 397
                S   PPP
Sbjct: 1002 PHGGSQIVPPP 1012


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +1

Query: 121 NGSEAGGVTHYKCERRCPVPSIRPTLTG*VKLVAHNRDG-VPVCSWLAIEWTGPIHPPVS 297
           NGS++    H     R P PS RP   G    +     G + + S  +  +  P  PP +
Sbjct: 28  NGSQSNNTVHQYQPPRMPPPSTRPQTDGNSNQIPMENVGHISLSSANSHAYAPPSGPPPN 87

Query: 298 NGVRESG 318
            G    G
Sbjct: 88  TGANSYG 94


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 731 LTVLAVRPSGLLSRVLPRVQPSGL--HRPIRDSAVLAIIRRDCSPLVAP-RPTCFRMTLP 561
           L++   +P+G++   + RV    L  H         A+I +  + LV P RP  F   L 
Sbjct: 160 LSIAWKQPTGIVDGNVIRVLSRALAIHSDCSKGKANALIWKLANELVDPVRPGDFNQALM 219

Query: 560 PVGAVRCT 537
            +GA+ CT
Sbjct: 220 ELGAITCT 227


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 300 WGKRERSETMAEITTPHSYP*PAR 371
           W +R +S+T++ + T +S P P+R
Sbjct: 18  WSERLKSQTISHLPTDYSRPVPSR 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,590
Number of Sequences: 5004
Number of extensions: 76912
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)