Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7i01
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.57 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   4.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 525 LPCWRAPHCSHWGQCHPETGGPGRHQGG 608
           LP    PH  H  Q HP  G    HQ G
Sbjct: 312 LPPSYHPHQHHPSQYHPHRGSSPHHQHG 339


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 303 PITNRGVYWSRPFDSQPRANRYTVP 229
           P  NR VY S+P    PR  R   P
Sbjct: 97  PGNNRPVYISQPRPPHPRLRREAEP 121



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 303 PITNRGVYWSRPFDSQPRANRYTVP 229
           P  NR VY S+P    PR  R   P
Sbjct: 153 PGNNRPVYISQPRPPHPRLRREAEP 177


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 171 TSSLTLIVSDSASLGAIHVLCTILVTAPLVTRLRRLDFNREIKIMRIALKRVIVT 7
           +S L+L ++  AS     +LC + +   LVT +R  D   + K  +  L  ++++
Sbjct: 17  SSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 171 TSSLTLIVSDSASLGAIHVLCTILVTAPLVTRLRRLDFNREIKIMRIALKRVIVT 7
           +S L+L ++  AS     +LC + +   LVT +R  D   + K  +  L  ++++
Sbjct: 17  SSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 171 TSSLTLIVSDSASLGAIHVLCTILVTAPLVTRLRRLDFNREIKIMRIALKRVIVT 7
           +S L+L ++  AS     +LC + +   LVT +R  D   + K  +  L  ++++
Sbjct: 17  SSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 171 TSSLTLIVSDSASLGAIHVLCTILVTAPLVTRLRRLDFNREIKIMRIALKRVIVT 7
           +S L+L ++  AS     +LC + +   LVT +R  D   + K  +  L  ++++
Sbjct: 17  SSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +1

Query: 247 CSWLAIEWTGPI 282
           C W  ++WTG +
Sbjct: 223 CIWKGVKWTGKV 234


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +1

Query: 247 CSWLAIEWTGPI 282
           C W  ++WTG +
Sbjct: 276 CIWKGVKWTGKV 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,727
Number of Sequences: 438
Number of extensions: 6041
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)