Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7h24
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 30 1.6
02_03_0221 - 16554910-16555560 29 2.8
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 29 3.7
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 29 4.9
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 29 4.9
12_01_0849 + 7948693-7948996,7949829-7950610 28 6.4
11_06_0184 - 21006659-21009823 28 6.4
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 8.5
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 159 STKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCP--GTTNGP 281
S + A ++ +A S+ GRSF P A RYS P T+NGP
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGP 380
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 370 ALLLCLIGCCPCACIPYC-TDSCKDA 444
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 ASTKSASVQ*PDTARSIPGRSFRRPR-APPAVRYSCPG 266
A +AS+ A ++PGR+FR PR + P SC G
Sbjct: 2 AMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDG 39
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 487 NR*IFQLVQLIINCKNNILVLLFNSILSYELSI 585
NR +F VQ + CK N + L+ IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 144 GLRTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTNGP*AHEH*LP 305
GL A+T + V P+ A +PG+S R P PA + G A H LP
Sbjct: 1621 GLTEANTFATRVMNPNAAEFVPGQS-RSPNGNPASPNGPLASPGGTEASPHGLP 1673
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 186 PDTARSIPGRSFRRPRAPPAVRYSCPG--TTNGP*AHEH*LPFMQCGNRHQSRSRASD*N 359
P RS G FRR RAP V S G + P A P C + RS +S
Sbjct: 281 PPPHRSSFGNPFRRARAPADVAISSSGIAASRLPSATPPLHPNPACVRYRRLRS-SSLTT 339
Query: 360 PPVCFASLPNRLL 398
PPV +SLP R L
Sbjct: 340 PPVGRSSLPARRL 352
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 376 LLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQLVQLIIN 525
LL + C CA + CT+ K A + C N +A G + I+ LV + +N
Sbjct: 443 LLTSMSCSDCAVV-LCTNDSKMAKYCCSNDSANDGP--QIIYSLVDIYLN 489
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 397 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 299
++L E + GG SL+R +L +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,254
Number of Sequences: 37544
Number of extensions: 341490
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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