Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h20
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    23   4.2  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    23   5.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    23   7.3  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    22   9.6  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 26  VIRVEAKNDYSLLACTAV-YAYCCKCGQYIG 115
           VI +E K +        V + +CC+C  YIG
Sbjct: 50  VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIG 80


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 54  ILCWLALLSTLTAVN 98
           ILCWL +L+ L A N
Sbjct: 384 ILCWLNILAGLNAQN 398


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 124 GNTANILTAFTAVSVDSSASQQRIVIFCFNPNNXXW 17
           G  AN L      SVDSSAS      F   P+   W
Sbjct: 149 GFEANFLLQQLFASVDSSASDISFDAFSLLPHLLKW 184


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 68  CTAVYAYCCKCG 103
           C  +Y YC KCG
Sbjct: 328 CIELYKYCEKCG 339


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  LLSTLTAVNAVNILAVF 122
           LLST  A+NA+N L  F
Sbjct: 470 LLSTKDAINAINTLLNF 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,238
Number of Sequences: 5004
Number of extensions: 4554
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)